Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature

机译：本体查询服务在生物医学文献信息检索中的应用

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With the vast amount of biomedical data we face the necessity to improve information retrieval processes in biomedical domain. The use of biomedical ontologies facilitated the combination of various data sources (e.g. scientific literature, clinical data repository) by increasing the quality of information retrieval and reducing the maintenance efforts. In this context, we developed Ontology Look-up services (OLS), based on NEWT and MeSH vocabularies. Our services were involved in some information retrieval tasks such as gene/disease normalization. The implementation of OLS services significantly accelerated the extraction of particular biomedical facts by structuring and enriching the data context. The results of precision in normalization tasks were boosted on about 20%.

机译：随着大量的生物医学数据，我们面临着改善生物医学领域信息检索过程的必要性。通过提高信息检索的质量并减少维护工作，生物医学本体的使用促进了各种数据源（例如科学文献，临床数据存储库）的结合。在这种情况下，我们基于NEWT和MeSH词汇开发了本体查询服务（OLS）。我们的服务涉及一些信息检索任务，例如基因/疾病标准化。通过构建和丰富数据上下文，OLS服务的实施极大地加速了特定生物医学事实的提取。标准化任务的精度结果提高了约20％。

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来源
《Data and knowledge for medical decision support》|2013年|155-159|共5页
会议地点 Prague(CZ)
作者
Dina VISHNYAKOVA; Emilie PASCHE; Christian LOVIS; Patrick RUCH;
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作者单位

BiTeM Group,Division of Medical Information Sciences, University Hospitals and University of Geneva, Switzerland;

BiTeM Group,Division of Medical Information Sciences, University Hospitals and University of Geneva, Switzerland;

Division of Medical Information Sciences, University Hospitals and University of Geneva, Switzerland;

Information Science Department, University of Applied Science of Geneva, Switzerland;

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原文格式 PDF
正文语种 eng
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关键词
ontology; information retrieval; literature curation;

机译：本体信息检索；文学策展;

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专利

1. G-Bean: an ontology-graph based web tool for biomedical literature retrieval [J] . James Z Wang, Yuanyuan Zhang, Liang Dong, BMC Bioinformatics . 2014,第SUPPLEMENTa12期

机译：G-Bean：用于生物医学文献检索的基于本体图的网络工具
2. SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts [J] . Julien Gobeill, Déborah Caucheteur, Pierre-André Michel, Nucleic acids research . 2020,第W1期

机译：SIB文献服务：生物医学文献的RESTFIC定制搜索引擎，丰富自动映射的生物医学概念
3. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications [J] . Csongor Nyulas, Mark A. Musen, Natalya F. Noy, Nucleic acids research . 2011,第suppla2期

机译：BioPortal：通过国家生物医学本体中心的新Web服务增强功能，以访问和使用软件应用程序中的本体
4. Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature [C] . Dina VISHNYAKOVA, Emilie PASCHE, Christian LOVIS Patrick RUCH The Special Topics Conference of the European Federation for Medical Informatics . . 2013

机译：利用本体查找服务在生物医学文献中的信息检索中
5. Hybrid query expansion on ontology graph in biomedical information retrieval. [D] . Dong, Liang. 2012

机译：生物医学信息检索中本体图的混合查询扩展。
6. G-Bean: an ontology-graph based web tool for biomedical literature retrieval [O] . James Z Wang, Yuanyuan Zhang, Liang Dong, 2014

机译：G-Bean：用于生物医学文献检索的基于本体图的网络工具
7. G-Bean: an ontology-graph based web tool for biomedical literature retrieval [O] . Wang, James Z., Zhang, Yuanyuan, Dong, Liang, 2015

机译：G-Bean：基于本体图的生物医学文献网络工具恢复

Utilization of Ontology Look-Up Services in Information Retrieval for Biomedical Literature

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