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Coping with Dynamical Structures for Interdisciplinary Applications of Membrane Computing

机译:膜结构跨学科应用的动态结构应对。

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Biological information processing and maintenance of life mainly utilise dynamical structures at different levels from a nanoscopic up to a macroscopic scale. Providing a high degree of reliability, repro-ducibility, unambiguousness, and addressability, underlying compositional processes appear as ideal candidates to perform computational tasks in a discretised manner. In this essay, we consider four levels in which dynamical structures enable an efficient handling with information: (1) the molecular level, (2) the level of reaction network modules, (3) the level of membranes, and (4) the level of higher-order organisms and populations. All of them have in common the capability of controlled memory-based state transitions and hence dedicated systems's configurations encoding behavioural patterns. Due to its discrete algebraic nature, membrane systems represent advantageous frameworks in order to formalise corresponding activities. This in turn paves the way towards efficient tools inspired by nature with manifold smart applications in engineering, computer science, and systems biology. We illustrate membrane system's abilities, benefits, and progress for coping with dynamical structures from an integrative perspective.
机译:生物信息处理和生命维持主要利用从纳米级到宏观级的不同层次的动力学结构。由于提供了高度的可靠性,可重复性,明确性和可寻址性,底层的合成过程似乎是以离散方式执行计算任务的理想候选者。在本文中,我们考虑四个层次,其中动力学结构可以有效地处理信息:(1)分子层次,(2)反应网络模块的层次,(3)膜的层次和(4)层次高阶生物和种群。它们都具有基于受控制的基于内存的状态转换的功能,因此具有对行为模式进行编码的专用系统的配置。由于其离散的代数性质,膜系统代表有利的框架以便形式化相应的活动。反过来,这又为在自然界中获得启发的高效工具铺平了道路,在工程,计算机科学和系统生物学中使用了多种智能应用程序。我们从综合的角度说明了膜系统在应对动力学结构方面的能力,优势和进展。

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