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Inference of genetic networks using S-system

机译:使用S-System推断遗传网络

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In this paper we present an evolutionary approach for inferring the structure and dynamics in gene circuits from observed expression kinetics. For representing the regulatory interactions in a genetic network the decoupled S-system formalism has been used. We proposed an Information Criteria based fitness evaluation for model selection instead of the traditional Mean Squared Error (MSE) based fitness evaluation. A hill climbing local search method has been incorporated in our evolutionary algorithm for attaining the skeletal architecture which is most frequently observed in biological networks. Using small and medium-scale artificial networks we verified the implementation. The reconstruction method identified the correct network topology and predicted the kinetic parameters with high accuracy.
机译:本文介绍了一种进化方法,用于推断观察到的表达动力学基因电路中的结构和动力学。对于代表遗传网络中的调节相互作用,已经使用了解耦的S-System形式主义。我们提出了一种基于信息标准的适用性评估,用于模型选择而不是基于传统的平均平方误差(MSE)的健身评估。我们的爬山本地搜索方法已被纳入我们的进化算法,以实现在生物网络中最常观察到的骨架架构。使用中小型人工网络,我们验证了实施。重建方法识别正确的网络拓扑,并以高精度预测动力学参数。

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