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New algorithms for protein structure comparison and protein structure prediction.

机译：蛋白质结构比较和蛋白质结构预测的新算法。

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摘要

Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups therefore algorithms of protein structure alignment, protein similarity search and protein structure prediction are very helpful for protein biologists. We developed new algorithms for the problems in this field. The algorithms are tested with structures from the Protein Data Bank (PDB) and SCOP, a Structure Classification of Protein Database. The experimental results show that our tools are more efficient than some well known systems for finding similar protein structures and predicting protein structures.

机译：蛋白质显示出各种各样的3D构象，可用于推断它们的进化关系并将其分类为更一般的组，因此蛋白质结构比对，蛋白质相似性搜索和蛋白质结构预测的算法对蛋白质生物学家非常有用。我们针对该领域的问题开发了新的算法。使用来自蛋白质数据库（PDB）和SCOP（蛋白质数据库的结构分类）的结构对算法进行了测试。实验结果表明，与发现某些相似蛋白质结构并预测蛋白质结构的系统相比，我们的工具效率更高。

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作者
Lu, Zaixin.;
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作者单位

The University of Texas - Pan American.;

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授予单位 The University of Texas - Pan American.;
学科 Biology Bioinformatics.Computer Science.
学位 M.S.
年度 2010
页码 53 p.
总页数 53
原文格式 PDF
正文语种 eng
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专利

1. A refined accuracy index to evaluate algorithms of protein secondary structure prediction. [J] . Zhang CT, Zhang R Proteins: Structure, Function, and Genetics . 2001,第4期

机译：精确的精度指标，用于评估蛋白质二级结构预测算法。
2. Scatter search algorithm for protein structure prediction. [J] . Mansour N, Kehyayan C, Khachfe H International journal of bioinformatics research and applications . 2009,第5期

机译：蛋白质结构预测的散点搜索算法。
3. Comparison of the predicted structures of loops in the ras-SOS protein bound to a single ras-p21 protein with the crystallographically determined structures in SOS bound to two ras-p21 proteins. [J] . Smith S, Hyde M, Pincus MR The protein journal . 2005,第6期

机译：与单个ras-p21蛋白结合的ras-SOS蛋白中环的预测结构与与两个ras-p21蛋白结合的SOS中晶体学确定的结构的比较。
4. FROG (Fitted Rotation and Orientation of protein structure by means of real-coded Genetic algorithm): Asynchronous Parallelizing for Protein Structure-Based Comparison on the Basis of Geometrical Similarity [C] . Sung-Joon Park, Masayuki Yamamura Workshop on Genome Informatics . 2002

机译：青蛙（通过实际编码遗传算法（通过实际编码遗传算法拟合蛋白质结构的旋转和取向）：基于几何相似性的基于蛋白质结构的比较异步平行化
5. Evolution-aware Protein Structure Comparison and Applications in Protein-Protein Interaction Prediction. [D] . Zhao, Chunyu. 2016

机译：进化感知的蛋白质结构比较和在蛋白质-蛋白质相互作用预测中的应用。
6. Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods [O] . Bo Yao, Dandan Zheng, Shide Liang, -1

机译：抗原蛋白结构的构象B细胞表位预测：当前算法的回顾和与常见的结合位点预测方法的比较。
7. Bivariate estimation of distribution algorithms for protein structure prediction. [O] . Bonetti Daniel, Delbem Alexandre, Einbeck Jochen 2014

机译：用于蛋白质结构预测的分布算法的双变量估计。
8. Solving the Protein Structure Prediction Problem With Fast Messy Genetic Algorithms (Scaling the Fast Messy Genetic Algorithm to Medium-Sized Peptides by Detecting Secondary Structures) [R] . Michaud, S. R. 2001

机译：用快速遗传算法求解蛋白质结构预测问题（通过检测二级结构将快速遗传算法扩展到中等大小的肽）

New algorithms for protein structure comparison and protein structure prediction.

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