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Novel principles of gamma-retroviral insertional transcription activation in murine leukemia virus-induced end-stage tumors

机译:鼠白血病病毒诱导的晚期肿瘤中γ-逆转录病毒插入转录激活的新原理

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摘要

BackgroundInsertional mutagenesis screens of retrovirus-induced mouse tumors have proven valuable in human cancer research and for understanding adverse effects of retroviral-based gene therapies. In previous studies, the assignment of mouse genes to individual retroviral integration sites has been based on close proximity and expression patterns of annotated genes at target positions in the genome. We here employed next-generation RNA sequencing to map retroviral-mouse chimeric junctions genome-wide, and to identify local patterns of transcription activation in T-lymphomas induced by the murine leukemia gamma-retrovirus SL3-3. Moreover, to determine epigenetic integration preferences underlying long-range gene activation by retroviruses, the colocalization propensity with common epigenetic enhancer markers (H3K4Me1 and H3K27Ac) of 6,117 integrations derived from end-stage tumors of more than 2,000 mice was examined.
机译:背景技术逆转录病毒诱导的小鼠肿瘤的诱变筛选筛查已被证明对人类癌症研究和了解基于逆转录病毒的基因疗法的不良反应有价值。在以前的研究中,将小鼠基因分配给单个逆转录病毒整合位点的方法是基于注释基因在基因组目标位置的紧密接近和表达模式。在这里,我们采用了下一代RNA测序技术来在全基因组范围内绘制逆转录病毒-小鼠嵌合连接,并确定鼠白血病伽马逆转录病毒SL3-3诱导的T淋巴瘤中转录激活的局部模式。此外,为了确定通过逆转录病毒激活远距离基因的潜在表观遗传整合偏好,研究了与来自2000多只小鼠的晚期肿瘤的6,117例整合的常见表观遗传增强子标记(H3K4Me1和H3K27Ac)的共定位倾向。

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