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JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface

机译:JPhyloIO:一个Java库用于通过公共接口对不同系统发育文件格式进行基于事件的读写

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摘要

BackgroundToday a variety of phylogenetic file formats exists, some of which are well-established but limited in their data model, while other more recently introduced ones offer advanced features for metadata representation. Although most currently available software only supports the classical formats with a limited metadata model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the data and metadata models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metadata annotation.
机译:背景技术如今,存在各种各样的系统发育文件格式,其中一些格式完善,但其数据模型有限,而其他最近引入的格式则提供元数据表示的高级功能。尽管大多数当前可用的软件仅支持元数据模型有限的经典格式,但希望能够支持更高级的格式。这对于用户产生丰富的注释数据是必要的,可以有效地重用这些数据并使底层工作流易于重现。一个编程库可以抽象化不同格式的数据和元数据模型,并允许在一个步骤中支持所有这些模型,这将大大简化新软件的开发和现有软件的扩展,从而满足对更好的元数据注释的需求。

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