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Structure and Dynamics of Interfacial Water in an Lα Phase Lipid Bilayer from Molecular Dynamics Simulations

机译:Lα相脂质双层中界面水的结构和动力学的分子动力学模拟

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摘要

Based on molecular dynamics simulations, an analysis of structure and dynamics is performed on interfacial water at a liquid crystalline dipalmitoylphosphatidycholine/water system. Water properties relevant for understanding NMR relaxation are emphasized. The first and second rank orientational order parameters of the water O–H bonds were calculated, where the second rank order parameter is in agreement with experimental determined quadrupolar splittings. Also, two different interfacial water regions (bound water regions) are revealed with respect to different signs of the second rank order parameter. The water reorientation correlation function reveals a mixture of fast and slow decaying parts. The fast (ps) part of the correlation function is due to local anisotropic water reorientation whereas the much slower part is due to more complicated processes including lateral diffusion along the interface and chemical exchange between free and bound water molecules. The 100-ns-long molecular dynamics simulation at constant pressure (1 atm) and at a temperature of 50°C of 64 lipid molecules and 64 × 23 water molecules lack a slow water reorientation correlation component in the ns time scale. The 2H2O powder spectrum of the dipalmitoylphosphatidycholine/water system is narrow and consequently, the NMR relaxation time T2 is too short compared to experimental results.
机译:基于分子动力学模拟,在液晶二棕榈酰磷脂酰胆碱/水系统中对界面水进行结构和动力学分析。强调了与理解NMR弛豫相关的水性质。计算了水键的第一和第二阶取向参数,其中第二阶参数与实验确定的四极分裂相符。而且,关于第二等级次序参数的不同符号,揭示了两个不同的界面水区域(结合水区域)。水重新定向相关函数揭示了快速和缓慢衰变部分的混合。相关函数的快速(ps)部分归因于局部各向异性的水重新定向,而慢得多的部分归因于更复杂的过程,包括沿界面的侧向扩散以及自由水分子与结合水分子之间的化学交换。在ns的时间范围内,在恒压(1 atm)和50°C的温度下,100个ns长的分子动力学模拟缺少64个脂质分子和64×23个水分子在50℃的温度下缓慢的水取向相关性。二棕榈酰磷脂酰胆碱/水系统的 2 H2O粉末光谱较窄,因此NMR弛豫时间T2与实验结果相比太短。

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