Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species

M. Delghandi; S. Goddard; D.R. Jerry; H.T. Dao; M.S.N. Al Hinai; W. Al-Amry; A. Al-Marzouqi

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Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species

机译：用于热带扇贝多刺龙虾（Panulirus homarus）遗传种群和多样性研究的新型基因组微卫星标记及其在相关Panulirus物种中的潜在应用

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Fourteen polymorphic microsatellites with perfect di-, tri-, and tetra-nucleotide repeats were identified for Panulirus homarus using Roche 454 whole-genome sequencing method. Microsatellites were efficiently co-amplified in four multiplexes and a singleplex, providing consistent and easily interpretable genotypes. The number of alleles per locus ranged from 2 to 11 with the observed and expected heterozygosity ranging between 0.000-0.532 and 0.031-0.836, respectively. A significant deviation from Hardy-Weinberg equilibrium was observed for majority of the loci, probably due to homozygote excess. Genetic linkage disequilibrium analysis between all the possible pairs of the loci showed significant departure from the null hypothesis in the loci pairs Pho-G11-Pho-G33 and Pho-G33-Pho-G57. High success in primer cross-species amplification of these microsatellite markers indicates their utility for genetic studies of different Panulirus species.

机译：使用Roche 454全基因组测序方法，鉴定了14个具有完美的二，三和四核苷酸重复序列的多态微卫星。微卫星被有效地共扩增成四个多重和一个单一的多重，提供一致且易于解释的基因型。每个基因座的等位基因数量范围为2至11，观察到和预期的杂合度分别为0.000-0.532和0.031-0.836。对于大多数基因座，观察到与Hardy-Weinberg平衡存在显着偏差，这可能是由于纯合子过量所致。所有可能的基因座对之间的遗传连锁不平衡分析显示，与基因对Pho-G11-Pho-G33和Pho-G33-Pho-G57中的原假设相背离。这些微卫星标记在引物跨物种扩增中取得了巨大成功，表明它们可用于不同Panulirus物种的遗传研究。

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《Genetics and Molecular Research》 |2016年第2期|共5页
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M. Delghandi; S. Goddard; D.R. Jerry; H.T. Dao; M.S.N. Al Hinai; W. Al-Amry; A. Al-Marzouqi;
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Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species

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