Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom

Gaurav Sablok; XianMing Wu; Jimmy Kuo; Kinshuk Chandra Nayak; Vesselin Baev; Claudio Varotto; Fengfeng Zhou

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Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom

机译：变异偏见和翻译选择对番茄（Solanum lycopersicum）cv的翻译效率的组合效应。小汤姆

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Weconductedacomprehensiveanalysisofcodonusagebias(CUB)basedontheavailablenon-redundantfull-lengthcDNA(nrFLcDNA)andexpressedsequencetags(ESTs)dataofcultivarMicro-TomandevaluatedtheassociationsofobservedCUBandmeasurementsoftranscriptionalandtranslationaleffectiveness.Theanalysispresentedinourstudysuggestsacorrelation,whichisnegativebuthighlycorrelatedbetweenAxis1andGCsub3s/sub(r#xA0;=#xA0;minus;#xA0;0.827,P#xA0;#xA0;0.01),indicatingthatmutationalbiashasasignificantanddominantrepressiveroletothechoicesofGCsub3/sub.Wealsoobservedastrongpositivecorrelationbetweencodonadaptationindex(CAI)andtranslationaladaptationindex(tAIsubg/sub)(0.407,P#xA0;#xA0;0.01),whichdemonstratesthefacilitationofefficienttranslationbytheoptimalcodonusagepatternsofthehighlyexpressedgenes.WebelievethatthecompletesetofoptimalcodonusagepatternsdetectedinthisstudywillserveasamodeltoenhancethetransgenesisinthestudiedcultivarofemSolanumlycopersicum/em./p/div

机译：Weconductedacomprehensiveanalysisofcodonusagebias（CUB）basedontheavailablenon-redundantfull-lengthcDNA（nrFLcDNA）andexpressedsequencetags（EST序列）dataofcultivarMicro-TomandevaluatedtheassociationsofobservedCUBandmeasurementsoftranscriptionalandtranslationaleffectiveness.Theanalysispresentedinourstudysuggestsacorrelation，whichisnegativebuthighlycorrelatedbetweenAxis1andGC <子> 3秒（R＃XA0; =＃XA0;减去;＃XA0; 0.827，P＃XA0 ; ＃xA0; 0.01），表明变异偏向对GC _{3 的选择具有显着和主要的抑制作用。我们还观察到密码子适应指数（CAI）与翻译适应指数（tAI _{g ）之间的强正相关性（0.407，P＃xA; 0.01; P}}

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《Genomics》 |2013年第5期|共页
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Gaurav Sablok; XianMing Wu; Jimmy Kuo; Kinshuk Chandra Nayak; Vesselin Baev; Claudio Varotto; Fengfeng Zhou;
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中图分类医学遗传学;
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1. Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom [J] . SablokG., WuX., KuoJ., Genomics . 2013,第5期

机译：变异偏见和翻译选择对番茄（Solanum lycopersicum）cv的翻译效率的组合效应。小汤姆
2. Streptomyces sp. strain SK68, isolated from peanut rhizosphere, promotes growth and alleviates salt stress in tomato (Solanum lycopersicum cv. Micro-Tom) [J] . Karthiyaini Damodharan, Sasikumar Arunachalam Palaniyandi, Bao Le, The journal of microbiology . 2018,第10期

机译：streptomyces sp。菌株SK68与花生根际分离，促进生长和缓解番茄（Solanum Lycopersicum CV）的盐胁迫。微米）
3. Effect of excess zinc and arbuscular mycorrhizal fungus on bioproduction and trace element nutrition of Tomato (Solanum lycopersicum L. cv. Micro-Tom) [J] . Ibiang Young Bassey, Innami Haruki, Sakamoto Kazunori Soil Science and Plant Nutrition . 2018,第3期

机译：多余锌和丛枝菌根真菌对番茄生物生产和微量元素营养的影响（Solanum Lycopersicum L.CV.Micro-Tom）
4. Transformation of PRT6 RNAi construct into tomato (Solanum lycopersicum) cv. Micro-Tom [C] . Intan Elya Suka, Bee Lynn Chew, Hoe-Han Goh, UKM FST Postgraduate Colloquium . 2018

机译：PRT6 RNAI构建体转化为番茄（Solanum Lycopersicum）CV。微米
5. Critical Period for Weed Control in Grafted Tomato ( Solanum lycopersicum) and Herbicide Tolerance of Grafted Tomato and Eggplant (Solanum melongena). [D] . Chaudhari, Sushila. 2015

机译：嫁接番茄（Solanum lycopersicum）杂草控制的关键时期以及嫁接番茄和茄子（Solanum melongena）的除草剂耐受性。
6. Explaining complex codon usage patterns with selection for translational efficiency mutation bias and genetic drift [O] . Premal Shah, Michael A. Gilchrist 2011

机译：通过选择翻译效率突变偏倚和遗传漂移来解释复杂的密码子使用方式
7. Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom [O] . Sablok Gaurav, Wu XianMing, Kuo Jimmy, 2013

机译：变异偏见和翻译选择对番茄（Solanum lycopersicum）cv的翻译效率的组合效应。小汤姆

Combinational effect of mutational bias and translational selection for translation efficiency in tomato (Solanum lycopersicum) cv. Micro-Tom

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