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首页> 外文期刊>Standards in Genomic Sciences >High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway
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High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway

机译：沙门氏菌型菌株（AW-6T）的高质量草图基因组序列，该双酚降解物具有涉及儿茶酚途径的基因

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Olivibacter sitiensis Ntougias et al. 2007 is a member of the family Sphingobacteriaceae, phylum Bacteroidetes. Members of the genus Olivibacter are phylogenetically diverse and of significant interest. They occur in diverse habitats, such as rhizosphere and contaminated soils, viscous wastes, composts, biofilter clean-up facilities on contaminated sites and cave environments, and they are involved in the degradation of complex and toxic compounds. Here we describe the features of O. sitiensis AW-6T, together with the permanent-draft genome sequence and annotation. The organism was sequenced under the Genomic Encyclopedia for Bacteria and Archaea (GEBA) project at the DOE Joint Genome Institute and is the first genome sequence of a species within the genus Olivibacter. The genome is 5,053,571 bp long and is comprised of 110 scaffolds with an average GC content of 44.61%. Of the 4,565 genes predicted, 4,501 were protein-coding genes and 64 were RNA genes. Most protein-coding genes (68.52%) were assigned to a putative function. The identification of 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase-coding genes indicates involvement of this organism in the catechol catabolic pathway. In addition, genes encoding for β-1,4-xylanases and β-1,4-xylosidases reveal the xylanolytic action of O. sitiensis.
机译：Sitensis Olivibacter sitiensis Ntougias等。 2007年是Sphingobacteriaceae（拟杆菌门）的家庭成员。橄榄杆菌属的成员在系统发育上是多样的，并且具有重要意义。它们存在于多种生境中，例如根际和受污染的土壤，粘性废物，堆肥，受污染场所和洞穴环境中的生物过滤器清理设施，并且它们参与复杂和有毒化合物的降解。在这里，我们描述了O. sitiensis AW-6T的特征，以及永久草案基因组序列和注释。该生物体是在美国能源部联合基因组研究所的细菌和古细菌基因组百科全书（GEBA）项目下进行测序的，它是奥氏杆菌属中一个物种的第一个基因组序列。基因组长5,053,571 bp，由110个支架组成，平均GC含量为44.61％。在预测的4,565个基因中，有4,501个是蛋白质编码基因，而64个是RNA基因。大多数蛋白质编码基因（68.52％）被分配给假定的功能。对2-酮-4-戊烯酸水合酶/ 2-氧代庚-3-烯-1,7-二酸水合酶编码基因的鉴定表明该生物参与了儿茶酚分解代谢途径。另外，编码β-1，4-木聚糖酶和β-1，4-木糖苷酶的基因揭示了O. sitiensis的木聚糖分解作用。

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