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BambooGDB: a bamboo genome database with functional annotation and an analysis platform

机译：BambooGDB：具有功能注释和分析平台的竹子基因组数据库

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Bamboo, as one of the most important non-timber forest products and fastest-growing plants in the world, represents the only major lineage of grasses that is native to forests. Recent success on the first high-quality draft genome sequence of moso bamboo (Phyllostachys edulis) provides new insights on bamboo genetics and evolution. To further extend our understanding on bamboo genome and facilitate future studies on the basis of previous achievements, here we have developed BambooGDB, a bamboo genome database with functional annotation and analysis platform. The de novo sequencing data, together with the full-length complementary DNA and RNA-seq data of moso bamboo composed the main contents of this database. Based on these sequence data, a comprehensively functional annotation for bamboo genome was made. Besides, an analytical platform composed of comparative genomic analysis, protein–protein interactions network, pathway analysis and visualization of genomic data was also constructed. As discovery tools to understand and identify biological mechanisms of bamboo, the platform can be used as a systematic framework for helping and designing experiments for further validation. Moreover, diverse and powerful search tools and a convenient browser were incorporated to facilitate the navigation of these data. As far as we know, this is the first genome database for bamboo. Through integrating high-throughput sequencing data, a full functional annotation and several analysis modules, BambooGDB aims to provide worldwide researchers with a central genomic resource and an extensible analysis platform for bamboo genome. BambooGDB is freely available at http://www.bamboogdb.org/. Database URL: http://www.bamboogdb.org
机译：竹子是世界上最重要的非木材森林产品之一，也是生长最快的植物，它代表了森林原生的唯一主要草种。毛竹（Phyllostachys edulis）的第一个高质量草图基因组序列的最新成功为竹子的遗传和进化提供了新的见识。为了进一步扩展我们对竹子基因组的理解，并在先前的成就基础上促进未来的研究，我们在这里开发了BambooBDB，这是一个具有功能注释和分析平台的竹子基因组数据库。从头测序数据以及毛竹的全长互补DNA和RNA-seq数据构成了该数据库的主要内容。基于这些序列数据，对竹基因组进行了功能全面的注释。此外，还构建了一个由比较基因组分析，蛋白质-蛋白质相互作用网络，途径分析和基因组数据可视化组成的分析平台。作为了解和识别竹子生物学机制的发现工具，该平台可以用作帮助和设计实验以进行进一步验证的系统框架。此外，还集成了各种功能强大的搜索工具和便捷的浏览器，以促进这些数据的导航。据我们所知，这是第一个竹子的基因组数据库。通过整合高通量测序数据，完整的功能注释和几个分析模块，BambooGDB旨在为全球研究人员提供一个重要的基因组资源和一个可扩展的竹基因组分析平台。 BambooGDB可从http://www.bamboogdb.org/免费获得。数据库URL：http://www.bamboogdb.org

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