Transcriptome Assembly and Expression Data from Normal and Mantled Oil Palm Fruit

Jeremy R.Shearman; ChatchawanJantasuriyarat; DuangjaiSangsrakru; ThippawanYoocha; ApichartVannavichit; SithichokeTangphatsornruang; SomvongTragoonrung

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Transcriptome Assembly and Expression Data from Normal and Mantled Oil Palm Fruit

机译：正常和有壳油棕果的转录组组装和表达数据

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We performed RNA sequencing of fruit from three normal and three mantled (somaclonal variant affecting flower development) oil palm plants using a 454 pyrosequencer. The three normal fruit samples were combined and sequenced, generating 237 748 reads. The three mantled fruit samples were combined and sequenced giving 231 438 reads. The reads were assembled into 13 984 sequences that were clustered into 10 218 genes or gene families. This paper describes the generation of this transcriptome database and includes annotation of these genes from Blast2GO and blast results against the Arabidopsis protein database as well as identification of putative transcription factors. In addition to this, the expression values for each gene sequence of the normal samples are presented. This dataset will be of use to anyone working in oil palm genetics.

机译：我们使用454焦磷酸测序仪对3株正常的和3株经过修饰的（影响花发育的克隆克隆变体）油棕植物的果实进行了RNA测序。将三个正常水果样品合并并测序，产生237×748个读数。将三个披覆的水果样品合并并测序，得到231×438个读数。读段被组装成13 984个序列，这些序列聚集成10 218个基因或基因家族。本文描述了这个转录组数据库的生成，包括了来自Blast2GO的这些基因的注释以及针对拟南芥蛋白数据库的blast结果以及鉴定的转录因子。除此之外，还提供了正常样品每个基因序列的表达值。该数据集将对从事油棕遗传学研究的任何人有用。

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《Dataset Papers in Science》 |2013年第1期|共7页
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Jeremy R.Shearman; ChatchawanJantasuriyarat; DuangjaiSangsrakru; ThippawanYoocha; ApichartVannavichit; SithichokeTangphatsornruang; SomvongTragoonrung;
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1. Transcriptome analysis of normal and mantled developing oil palm flower and fruit [J] . ShearmanJ.R., JantasuriyaratC., SangsrakruD., Genomics . 2013,第5期

机译：正常和披覆发育中的油棕花和果实的转录组分析
2. Transcriptome analysis of normal and mantled developing oil palm flower and fruit [J] . Jeremy R. Shearman, Chatchawan Jantasuriyarat, Duangjai Sangsrakru, Genomics . 2013,第5期

机译：正常和披覆发育中的油棕花和果实的转录组分析
3. Transcriptome analysis reveals differentially expressed genes associated with the mantled homeotic flowering abnormality in oil palm (Elaeis guineensis) [J] . Thierry Beule, Celine Camps, Segolene Debiesse, Tree Genetics & Genomes . 2011,第1期

机译：转录组分析揭示了与油棕（Elaeis guineensis）的有盖顺势开花异常有关的差异表达基因。
4. Palm fruit harvester algorithm for elaeis guineensis oil palm fruit grading using UML [C] . Gaurang Patkar, G. S. G. N. Anjaneyulu, P. V. S. S. R. Chandra Mouli IEEE International Conference on Computational Intelligence and Computing Research . 2015

机译：基于UML的几内亚油棕棕榈果实收获机算法。
5. Analysis of expression, assembly and regulation of normal and mutant forms of mammalian pyruvate dehydrogenase multienzyme complex. [D] . Lib, Margarita Yulievna. 2002

机译：正常和突变形式的哺乳动物丙酮酸脱氢酶多酶复合物的表达，装配和调控分析。
6. Development of SSR markers based on transcriptome data and association mapping analysis for fruit shell thickness associated traits in oil palm (Elaeis guineensis Jacq.) [O] . Lixia Zhou, Rajesh Yarra, Zhihao Zhao, 2020

机译：基于转录组数据的SSR标记和果壳厚度相关性状的SSR标记的开发（Elaeis Guineensis Jacq.）
7. Transcriptome analysis of normal and mantled developing oil palm flower and fruit [O] . Shearman Jeremy R., Jantasuriyarat Chatchawan, Sangsrakru Duangjai, 2013

机译：正常和披覆发育中的油棕花和果实的转录组分析

Transcriptome Assembly and Expression Data from Normal and Mantled Oil Palm Fruit

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