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GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology

机译：GoMapMan：MapMan本体中植物基因注释的集成，整合和可视化

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摘要

GoMapMan (http://www.gomapman.org) is an open web-accessible resource for gene functional annotations in the plant sciences. It was developed to facilitate improvement, consolidation and visualization of gene annotations across several plant species. GoMapMan is based on the MapMan ontology, organized in the form of a hierarchical tree of biological concepts, which describe gene functions. Currently, genes of the model species Arabidopsis and three crop species (potato, tomato and rice) are included. The main features of GoMapMan are (i) dynamic and interactive gene product annotation through various curation options; (ii) consolidation of gene annotations for different plant species through the integration of orthologue group information; (iii) traceability of gene ontology changes and annotations; (iv) integration of external knowledge about genes from different public resources; and (v) providing gathered information to high-throughput analysis tools via dynamically generated export files. All of the GoMapMan functionalities are openly available, with the restriction on the curation functions, which require prior registration to ensure traceability of the implemented changes.
机译：GoMapMan（http://www.gomapman.org）是一种开放的Web访问资源，可用于植物科学中的基因功能注释。它的开发旨在促进多种植物物种的基因注释的改进，整合和可视化。 GoMapMan基于MapMan本体，以生物学概念的层次树的形式组织，该生物学树描述了基因功能。当前，包括模型物种拟南芥和三种农作物物种（马铃薯，番茄和水稻）的基因。 GoMapMan的主要特征是：（i）通过各种管理选项进行动态和交互式基因产物注释; （ii）通过整合直系同源物信息来整合不同植物物种的基因注释; （iii）基因本体变化和注释的可追溯性; （iv）整合关于来自不同公共资源的基因的外部知识; （v）通过动态生成的导出文件将收集的信息提供给高通量分析工具。所有GoMapMan功能都可以公开使用，并且对策展功能有所限制，这些功能需要事先注册以确保所实施更改的可追溯性。

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