Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde

Oumar Faye; Maria de Lourdes Monteiro; Bram Vrancken; Matthieu Prot; Sebastian Lequime; Maryam Diarra; Oumar Ndiaye; Tomas Valdez; Sandra Tavarez; Jessica Ramos; Silvania da Veiga Leal; Cecilio Pires; Antonio Moreira; Maria Filomena Tavares; Linete Fernandes; Jorge Noel Barreto; Maria do Céu Teixeira; Maria da Luz de Lima Mendon?a; Carolina Cardoso da Silva Leite Gomes; Mariano Salazar Castellon; Laurence Ma; Frédéric Lemoine; Fabiana Gámbaro-Roglia; Déborah Delaune; Gamou Fall; Ibrahima Socé Fall; Mamadou Diop; Anavaj Sakuntabhai; Cheikh Loucoubar; Philippe Lemey; Edward C. Holmes; Ousmane Faye; Amadou Alpha Sall; Etienne Simon-Loriere

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Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde

机译：2015-2016 Zika病毒爆发的基因组流行病学佛得角爆发

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During 2015-2016, Cape Verde, an island nation off the coast of West Africa, experienced a Zika virus (ZIKV) outbreak involving 7,580 suspected Zika cases and 18 microcephaly cases. Analysis of the complete genomes of 3 ZIKV isolates from the outbreak indicated the strain was of the Asian (not African) lineage. The Cape Verde ZIKV sequences formed a distinct monophylogenetic group and possessed 1-2 (T659A, I756V) unique amino acid changes in the envelope protein. Phylogeographic and serologic evidence support earlier introduction of this lineage into Cape Verde, possibly from northeast Brazil, between June 2014 and August 2015, suggesting cryptic circulation of the virus before the initial wave of cases were detected in October 2015. These findings underscore the utility of genomic-scale epidemiology for outbreak investigations.

机译：2015 - 2016年，西非海岸的岛屿佛得角佛得角经历了Zika病毒（Zikv）爆发，涉及7,580个疑似Zika病例和18例微叉病例。分析来自爆发的3个Zikv分离物的完整基因组表明，菌株是亚洲（非非洲）谱系的血统。 verde Zikv序列形成了一个不同的单胞遗传学基团，并具有1-2（T659a，i756V）的封套蛋白的独特氨基酸变化。 Phylogeach和血清学证据支持早期将这种血统引入Cape Verde，可能来自巴西东北部，2015年6月至2015年之间，建议在2015年10月检测到初始案件的初始疾病之前对病毒的循环循环。这些发现强调了该研究的效用爆发调查基因组级流行病学。

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《Emerging Infectious Diseases》 |2020年第6期|共7页
作者
Oumar Faye; Maria de Lourdes Monteiro; Bram Vrancken; Matthieu Prot; Sebastian Lequime; Maryam Diarra; Oumar Ndiaye; Tomas Valdez; Sandra Tavarez; Jessica Ramos; Silvania da Veiga Leal; Cecilio Pires; Antonio Moreira; Maria Filomena Tavares; Linete Fernandes; Jorge Noel Barreto; Maria do Céu Teixeira; Maria da Luz de Lima Mendon?a; Carolina Cardoso da Silva Leite Gomes; Mariano Salazar Castellon; Laurence Ma; Frédéric Lemoine; Fabiana Gámbaro-Roglia; Déborah Delaune; Gamou Fall; Ibrahima Socé Fall; Mamadou Diop; Anavaj Sakuntabhai; Cheikh Loucoubar; Philippe Lemey; Edward C. Holmes; Ousmane Faye; Amadou Alpha Sall; Etienne Simon-Loriere;
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关键词
Asian lineageBrazilCabo VerdeCape VerdeWest AfricaZika virusdisease outbreaksepidemiologic studiesepidemiologygenomicsmicrocephalyoutbreakphylogeographyserologyvector-borne infectionsviruses;

机译：亚洲线叶唑普拉威尔德佩贝维尤斯特Africazika病毒Disease爆炸式特异性研究过化术基因MICORCOCORCEOUTBEXPOLOGEGAGESEROGYVERCORES-FANTESSVIRUSES;

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1. Risk of introduction of poliovirus into a Dutch Cape Verdian community during an outbreak of poliovirus in Cape Verde, 2000. [J] . Mertens PL, Widdowson MA, van der Avoort HG, Tropical Medicine and International Health: TM and IH . 2006,第5期

机译：2000年在佛得角爆发脊髓灰质炎病毒期间，有将脊髓灰质炎病毒引入荷兰佛得角社区的风险。
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机译：在数据有限的情况下进行实时预测的简单框架：以2015年至2016年巴西Zika病毒（ZIKV）爆发为例
3. Assessing Zika Virus Transmission Within Households During an Outbreak in Martinique, 2015-2016 [J] . Cousien Anthony, Abel Sylvie, Monthieux Alice, American Journal of Epidemiology . 2019,第7期

机译：在2015-2016爆发期间评估家庭内的Zika病毒传输
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机译：2015年巴西Zika病毒疾病爆发的SIR模型
5. Molecular epidemiology of outbreaks of Spring Viremia of Carp Virus in North America, Europe and Asia. [D] . Miller, Otis, Jr. 2007

机译：北美，欧洲和亚洲的鲤鱼病毒春季病毒血症暴发的分子流行病学。
6. Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde [O] . Oumar Faye, Maria de Lourdes Monteiro, Bram Vrancken, 2020

机译：佛得角2015–2016年寨卡病毒爆发的基因组流行病学
7. Epidemiology of the Zika virus outbreak in the Cabo Verde Islands, West Africa [O] . José Lourenço, Maria de Lourdes Monteiro, Tomás Valdez, 2017

机译：Zika病毒爆发的流行病学在Cabo Verde Islands，西非

Genomic Epidemiology of 2015–2016 Zika Virus Outbreak in Cape Verde

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