CoronaPep: An Anti-Coronavirus Peptide Generation Tool

Kaushik Aman Chandra; Mehmood Aamir; Selvaraj Gurudeeban; Dai Xiaofeng; Pan Yi; Wei Dong-Qing

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CoronaPep: An Anti-Coronavirus Peptide Generation Tool

机译：Coronapep：抗冠状病毒肽生成工具

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The novel coronavirus (COVID-19) infections have adopted the shape of a global pandemic now, demanding an urgent vaccine design. The current work reports contriving an anti-coronavirus peptide scanner tool to discern anti-coronavirus targets in the embodiment of peptides. The proffered CoronaPep tool features the fast fingerprinting of the anti-coronavirus target serving supreme prominence in the current bioinformatics research. The anti-coronavirus target protein sequences reported from the current outbreak are scanned against the anti-coronavirus target data-sets via CORONAPEP which provides precision-based anti-coronavirus peptides. This tool is specifically for the coronavirus data, which can predict peptides from the whole genome, or a gene or protein's list. Besides it is relatively fast, accurate, userfriendly and can generate maximum output from the limited information. The availability of tools like CORONAPEP will immeasurably perquisite researchers in the discipline of oncology and structure-based drug design.

机译：目前，新型冠状病毒（Covid-19）感染现在采用了全球大流行的形状，要求紧急疫苗设计。目前的工作报告了抗冠状病毒肽扫描仪工具，以探测肽的抗冠状病毒靶标的肽。提供的Coronapep工具具有在当前生物信息学研究中服务于最高突出的抗冠状病毒目标的快速指纹。从当前爆发报告的抗冠状病毒靶蛋白序列通过Coronapep扫描抗冠状病毒靶数据集，该抗冠状病毒靶数据集提供精密基抗冠状病毒肽。该工具专门针对冠状病毒数据，其可以预测来自整个基因组的肽，或基因或蛋白质的名单。此外，它相对速度，准确，用户友好，并且可以从有限的信息产生最大输出。像Coronapep这样的工具的可用性将在肿瘤学和基于结构的药物设计中不可估量的研究人员。

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来源
《IEEE/ACM transactions on computational biology and bioinformatics》 |2021年第4期|1299-1304|共6页
作者
Kaushik Aman Chandra; Mehmood Aamir; Selvaraj Gurudeeban; Dai Xiaofeng; Pan Yi; Wei Dong-Qing;
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作者单位

Jiangnan Univ Wuxi Sch Med Wuxi 214122 Jiangsu Peoples R China;

Shanghai Jiao Tong Univ State Key Lab Microbial Metab Shanghai 200240 Peoples R China|Shanghai Jiao Tong Univ Sch Life Sci & Biotechnol Shanghai 200240 Peoples R China|Peng Cheng Lab Shenzhen 518055 Guangdong Peoples R China;

Henan Univ Technol Coll Food Sci & Engn Ctr Interdisciplinary Sci Computat Life Sci Zhengzhou 450001 Peoples R China|Concordia Univ Ctr Res Mol Modeling Montreal PQ H4B 1R6 Canada;

Jiangnan Univ Wuxi Sch Med Wuxi 214122 Jiangsu Peoples R China;

Georgia State Univ Dept Comp Sci Atlanta GA 30302 USA;

Shanghai Jiao Tong Univ State Key Lab Microbial Metab Shanghai 200240 Peoples R China|Shanghai Jiao Tong Univ Sch Life Sci & Biotechnol Shanghai 200240 Peoples R China|Peng Cheng Lab Shenzhen 518055 Guangdong Peoples R China;

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原文格式 PDF
正文语种 eng
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关键词
COVID-19; Peptides; Tools; Proteins; Tides; Software; Bioinformatics; Anti-coronavirus peptides; coronavirus; COVID-19; fingerprinting;

机译：Covid-19;肽;工具;蛋白质;潮汐;软件;生物信息学;抗冠状病毒肽;冠状病毒;Covid-19;指纹图谱;

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专利

1. pepgrep: A Tool for Peptide MS/MS Pattern Matching [J] . Igor Chernukhin 基因组蛋白质组与生物信息学报（英文版） . 2013,第002期
2. PepBind: A Comprehensive Database and Computational Tool for Analysis of Protein-peptide Interactions [J] . Arindam Atanu Das, Om Prakash Sharma, Muthuvel Suresh Kumar, 基因组蛋白质组与生物信息学报（英文版） . 2013,第004期
3. Evolutionary combinatorial chemistry, a novel tool for SAR studies on peptide transport across the blood-brain barrier. Part 2. Design, synthesis and evaluation of a first generation of peptides [J] . Teixido M, Belda I, Zurita E, Journal of peptide science: An official publication of the European Peptide Society . 2005,第12期

机译：进化组合化学，一种新型的SAR研究肽输送对血脑屏障的研究。第2.第一代肽的设计，合成和评估
4. ACPS: An accurate bioinformatics tool for precision-based anti-cancer peptide generation via omics data [J] . Kaushik Aman Chandra, Li Mengyang, Mehmood Aamir, Chemical biology and drug design . 2021,第2期

机译：ACPS：通过OMICS数据进行精确的基于抗癌肽的生物信息学工具
5. A-CaMP: a tool for anti-cancer and antimicrobial peptide generation [J] . Kaushik Aman Chandra, Mehmood Aamir, Peng Shaoliang, Journal of Biomolecular Structure and Dynamics . 2021,第1a2期

机译：A-CAMP：一种抗癌和抗菌肽的工具
6. Evolutionary combinatorial chemistry:a novel tool for SAR studies on peptide transport across the blood-brain barrier 2.Design,synthesis and evaluation of the first peptide generation [C] . Meritxell Teixido, Ignasi Belda, Sonia Gonzalez International Peptide Symposium;European Peptide Symposium . 2005

机译：进化组合化学：一种新型工具，用于血脑屏障肽输送的SAR研究2.第一肽生成的设计，合成和评价
7. Using Small Molecules and Peptides as Chemical Tools to Study Metal-Amyloid, Membrane-Amyloid, and Peptide-Amyloid Interactions. [D] . Pithadia, Amit S. 2016

机译：使用小分子和肽作为化学工具研究金属淀粉样蛋白，膜淀粉样蛋白和肽淀粉样蛋白相互作用。
8. Generation of Endosomolytic Reagents by Branching of Cell-Penetrating Peptides: Tools for the Delivery of Bioactive Compounds to Live Cells in Cis or Trans [O] . Alfredo M. Angeles-Boza, Alfredo Erazo-Oliveras, Ya-Jung Lee, -1

机译：核内体溶解试剂的产生通过细胞穿透肽的分支：工具生物活性化合物的递送至顺或反活细胞
9. Identifying anti-coronavirus peptides by incorporating different negative datasets and imbalanced learning strategies [O] . Yuxuan Pang, Zhuo Wang, Jhih-Hua Jhong, 2021

机译：通过纳入不同的负数据集和不平衡的学习策略来识别抗冠状病毒肽
10. Developing New Tools for the in vivo Generation/Screening of Cyclic Peptide Libraries. A New Combinatorial Approach for the Detection of Bacterial Toxin Inhibitors [R] . Camarero, J. A. 2007

机译：开发用于体内生成/筛选环肽库的新工具。用于检测细菌毒素抑制剂的新组合方法

CoronaPep: An Anti-Coronavirus Peptide Generation Tool

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