EXCLUSIVE SEQUENCES OF DIFFERENT GENOMES

SERGEY I. MITROFANOV∗‡ and ALEXANDER Y. PANCHIN∗†§SERGEI A. SPIRIN¶ and ANDREI V. ALEXEEVSKIu0002YURI V. PANCHIN

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EXCLUSIVE SEQUENCES OF DIFFERENT GENOMES

机译：不同基因组的排他性序列

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We studied the distribution of 1–7 bp words in a dataset that includes 139 complete eukaryotic genomes, 33 masked eukaryotic genomes and coding regions from 35 genomes. We tested different statistical models to determine over- and under-represented words. The method described by Karlin et al. has the strongest predictive power compared to other methods. Using this method we identified over- and under-represented words consistent within a large array of taxonomic groups. Some of those words have not yet been described as exclusive. For example, CGCG is over-represented in CG-deficient organisms. We also describe exceptions for widely known exclusive words, such as CG and TA.

机译：我们研究了一个数据集中1–7 bp单词的分布，该数据集包含139个完整的真核基因组，33个蒙面的真核基因组和35个基因组的编码区。我们测试了不同的统计模型，以确定出现过多和不足的单词。 Karlin等人描述的方法。与其他方法相比，具有最强的预测能力。使用这种方法，我们确定了在大量分类学组中一致的过多和不足的单词。这些词中的一些尚未被描述为排他性的。例如，CGCG在缺乏CG的生物体中过分表达。我们还将描述CG和TA等广为人知的专有词的例外。

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来源
《Journal of Bioinformatics and Computational Biology》 |2010年第3期|p.519-534|共16页
作者
SERGEY I. MITROFANOV∗‡ and ALEXANDER Y. PANCHIN∗†§SERGEI A. SPIRIN¶ and ANDREI V. ALEXEEVSKIu0002YURI V. PANCHIN;
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作者单位

∗Faculty of Bioengineering and BioinformaticsMoscow State University, Moscow, Russia†Institute for Information Transmission ProblemsRussian Academy of Sciences, Moscow, Russia‡mitroser04@mail.ru§alexpanchin@yahoo.com;

A.N. Belozersky Institute of Physical-Chemical BiologyMoscow State University, Moscow, RussiaScientific Research Institute for System Studies(NIISI RAN), Moscow, Russia秨sas@belozersky.msu.ruu0002aba@belozersky.msu.ru;

Institute for Information Transmission ProblemsRussian Academy of Sciences, Moscow, Russiaypanchin@yahoo.com;

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正文语种 eng
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关键词
Complete genomes; words; content; CpG; TpA.;

机译：完整的基因组;话;内容;CpG;TpA。;

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3. In silico-selection of Brassica rapa organelle genome-derived BACs using their end sequences and sequence level comparative analysis of the 124 kb mitochondrial genome sequences in the family Brassicaceae [J] . Jee Young Park, Soo-Jin Kwon, Beom-Soon Choi, Journal of Crop Science and Biotechnology . 2009,第4期

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4. GRSR: A Tool for Deriving Genome Rearrangement Scenarios from Multiple Unichromosomal Genome Sequences [C] . Dan Wang, Lusheng Wang International symposium on bioinformatics research and applications . 2017

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5. Exclusive Sharing of Genetic Materials in U.S. Agricultural Research: Antecedents and Consequences. [D] . Shin, Eunjung. 2013

机译：美国农业研究中遗传材料的独家共享：前因和后果。
6. Genome sequence of Candidatus Arsenophonus lipopteni the exclusive symbiont of a blood sucking fly Lipoptena cervi (Diptera: Hippoboscidae) [O] . Eva Nováková, Václav Hypša, Petr Nguyen, 2016

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7. Genome sequence of Arsenophonus lipopteni, the exclusive symbiont of a blood sucking fly (Diptera: Hippoboscidae) [O] . 2016

机译：吸脂蝇的独生共生体——s蝶（Arsenophonus lipopteni）的基因组序列（双翅目：河马科）

EXCLUSIVE SEQUENCES OF DIFFERENT GENOMES

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