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Biomolecular electrostatics and solvation: A computational perspective (Review)

机译:生物分子静电学和溶剂化:计算角度(综述)

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An understanding of molecular interactions is essential for insight into biological systems at the molecular scale. Among the various components of molecular interactions, electrostatics are of special importance because of their long-range nature and their influence on polar or charged molecules, including water, aqueous ions, proteins, nucleic acids, carbohydrates, and membrane lipids. In particular, robust models of electrostatic interactions are essential for understanding the solvation properties of biomolecules and the effects of solvation upon biomolecular folding, binding, enzyme catalysis, and dynamics. Electrostatics, therefore, are of central importance to understanding biomolecular structure and modeling interactions within and among biological molecules. This review discusses the solvation of biomolecules with a computational biophysics view toward describing the phenomenon. While our main focus lies on the computational aspect of the models, we provide an overview of the basic elements of biomolecular solvation (e.g. solvent structure, polarization, ion binding, and non-polar behavior) in order to provide a background to understand the different types of solvation models.
机译:对分子相互作用的理解对于深入了解分子规模的生物系统至关重要。在分子相互作用的各个组成部分中,静电具有特别重要的意义,因为它们具有长距离的性质,并且会影响极性或带电荷的分子,包括水,水离子,蛋白质,核酸,碳水化合物和膜脂质。特别是,强大的静电相互作用模型对于理解生物分子的溶剂化特性以及溶剂化对生物分子折叠,结合,酶催化和动力学的影响至关重要。因此,静电对理解生物分子结构以及模拟生物分子内部和之间的相互作用至关重要。这篇评论讨论了生物分子的溶剂化与计算生物物理学观点,以描述这种现象。虽然我们主要关注模型的计算方面,但我们提供了生物分子溶剂化的基本元素(例如溶剂结构,极化,离子键和非极性行为)的概述,以便为理解不同分子提供背景。溶剂化模型的类型。

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