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Recognition of DNA three-way junctions by metallosupramolecular cylinders: Gel electrophoresis studies

机译:金属超分子圆柱体识别DNA三向连接:凝胶电泳研究

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The interaction of metallosupramolecular cylinders with DNA three-way junctions has been studied by gel electrophoresis. A recent X-ray crystal structure of a palindromic oligonucleotide forming part of a complex with such a cylinder revealed binding at the heart of a three-way junction structure. The studies reported herein confirm that this is not solely an artefact of crystallisation and reveal that this is a potentially very powerful new mode of DNA recognition with wide scope. The cylinders are much more effective at stabilizing three-way junctions than simple magnesium dications or organic or metallo-organic tetracations, with the M cylinder enantiomer being more effective than P. The recognition is not restricted to three-way junctions formed from palindromic DNA with a central AT step at the junction; non-palindromic three-way junctions and those with GC steps are also stabilised. The cylinder is also revealed to stabilise other Y-shaped junctions, such as that formed at a fraying point in duplex DNA (for example, a replication fork), and other DNA three-way junction structures, such as those containing impaired nucleotides, perhaps by opening up this structure to access the central cavity.
机译:通过凝胶电泳研究了金属超分子圆柱体与DNA三向连接的相互作用。与这种圆柱体形成复合体一部分的回文寡核苷酸的最新X射线晶体结构揭示了在三向连接结构的核心处的结合。本文报道的研究证实,这不仅是结晶的人工产物,而且揭示了这是具有广泛范围的潜在的非常强大的DNA识别新模式。与简单的镁离子或有机或金属有机四阳离子相比,圆柱体在稳定三向连接方面更有效,M圆柱对映体比P更有效。识别不限于由回文DNA与交界处的中央AT台阶;非回文三通路口和带有GC步骤的路口也已稳定。还显示了圆柱体可以稳定其他Y形连接,例如在双链DNA(例如复制叉)的磨损点形成的连接,以及其他DNA三向连接结构,例如那些含有受损核苷酸的连接通过打开此结构以进入中央腔体。

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