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Density Functional Theory Vibrational Frequencies of Amides and Amide Dimers

机译:酰胺和酰胺二聚物的密度泛函理论振动频率

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Infrared spectra of amides and polypeptides can provide detailed information on conformation. An understanding of the amide group in model compounds is a vital step toward a deeper insight into the vibrational spectra of proteins. We show that in contrast to MP2 and the popular B3LYP functional, which overestimate amide I frequencies by 20-80 cm~(-1), the recently developed empirical density functional, EDF1, yields unscaled harmonic vibrational frequencies of monoamides in close agreement with experimental data, even using the relatively small 6-31+G~* basis set. New calculations on several hydrogen-bonded amide dimers and the experimental data available for these dimers also support the conclusion that EDF1 yields frequencies in better agreement with experiment that MP2 or B3LYP. We present calculated minimum-energy structures and vibrational spectra of N-acetylglycine-N'-methylamide and N-acetyl-L-alanine-N'-methylamide at the EDF1/6-31G+~* and B3LYP/6-31+G~* levels.
机译:酰胺和多肽的红外光谱可以提供有关构象的详细信息。对模型化合物中酰胺基的理解是迈向深入了解蛋白质振动光谱的重要一步。我们发现,与MP2和流行的B3LYP功能相反,后者将酰胺I的频率高估了20-80 cm〜(-1),最近开发的经验密度函数EDF1产生了单酰胺的无标度谐波振动频率,与实验值非常一致。甚至使用相对较小的6-31 + G〜*基集。对几个氢键合酰胺二聚体的新计算以及可用于这些二聚体的实验数据也支持以下结论:EDF1产生的频率与MP2或B3LYP的实验更好地吻合。我们介绍了在EDF1 / 6-31G +〜*和B3LYP / 6-31 + G〜处N-乙酰基甘氨酸-N'-甲基酰胺和N-乙酰基-L-丙氨酸-N'-甲基酰胺的最小能级结构和振动光谱。 *水平。

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