Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

Martin W; Deusch O; Stawski N; Grunheit N; Goremykin V

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Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

机译：叶绿体基因组系统发育学：为什么我们需要独立的方法来进行植物分子进化

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The traditional approach to plant molecular phylogenetics involves amplifying, sequencing and analyzing one or a few genes from many species and is conducive to broad taxon sampling. An independent approach involves chloroplast genome sequencing, providing much larger amounts of data per taxon but for a smaller number of species. In principle, the two strategies can inform each other but in practice their results sometimes conflict for reasons that are currently debated. An Opinion article published in the October 2004 issue of Trends in Plant Science cautioned against the pursuit of genome-based phylogenies. Here, we provide a different perspective on issues at the heart of the current debate and defend the use of chloroplast genome phylogenetics for crucial species because it provides an independent test of hypotheses generated by the traditional approach.

机译：植物分子系统发育学的传统方法涉及扩增，测序和分析许多物种的一个或几个基因，有利于广泛的分类单元采样。一种独立的方法涉及叶绿体基因组测序，每个分类单元提供大量数据，但物种数量较少。原则上，这两种策略可以相互告知，但实际上，它们的结果有时会因当前争论的原因而冲突。 2004年10月出版的《植物科学趋势》上发表的一篇观点文章警告不要追求基于基因组的系统发育。在这里，我们对当前争论的核心问题提供了不同的观点，并捍卫了叶绿体基因组系统发育对重要物种的使用，因为它为传统方法所产生的假设提供了独立的检验。

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来源
《Trends in Plant Science》 |2005年第5期|共7页
作者
Martin W; Deusch O; Stawski N; Grunheit N; Goremykin V;
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正文语种 eng
中图分类植物学;
关键词
Angiosperms classification genetics; Chloroplasts genetics; Evolution; Molecular; Genome; Plant; Phylogeny; Research Support; Non-U.S. Gov't;

机译：被子植物分类遗传学;叶绿体遗传学;进化;分子;基因组;植物;系统发育;研究支持;非美国不会;

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1. Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution [J] . Martin W, Deusch O, Stawski N, Trends in Plant Science . 2005,第5期

机译：叶绿体基因组系统发育学：为什么我们需要独立的方法来进行植物分子进化
2. The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants [J] . Chumley TW, Palmer JD, Mower JP, Molecular biology and evolution . 2006,第11期

机译：天竺葵x hortorum的完整叶绿体基因组序列：陆地植物最大和高度重排的叶绿体基因组的组织和进化
3. Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution [J] . Xiong Qian, Hu Yuxin, Lv Wenqi, BMC Genomics . 2021,第1期

机译：五种Oeyoganium种类的叶绿体基因组：基因组结构，系统发育分析和自适应演化
4. Environmentally Friendly Approaches in Biotechnology: Engineering the Chloroplast Genome to Confer Stress Tolerance [C] . H. Daniell American Chemical Society . 2002

机译：生物技术的环保方法：将叶绿体基因组工程赋予应力耐受性
5. Phylogeny and biogeography of Gnetum (Gnetales): I. Evolution of the internal transcribed spacer of nuclear ribosomal DNA in a genus of gymnosperms, Gnetum; II. Molecular evolution of the chloroplast trnT-trnF region: Insights from Gnetales; III. Horizontal gene transfer from flowering plants to Gnetum (Gnetales); and, IV. Age, evolution, and biogeography of Gnetum [D] . Won, Hyosig 2004

机译：Gnetum（Gnetales）的系统发育和生物地理学：I.裸子植物Gnetum核内核糖体DNA内部转录间隔区的演变；二。叶绿体trnT-trnF区的分子进化：来自Gnetales的见解；三，基因水平从开花植物转移到Gnetum（Gnetales）；并且，IV。 Gnetum的年龄，进化和生物地理
6. Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution [O] . Wan-Lin Dong, Ruo-Nan Wang, Na-Yao Zhang, 2018

机译：兰花种叶绿体基因组的分子进化：系统发育关系和适应性进化的见解。
7. Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution [O] . Wan-Lin Dong, Ruo-Nan Wang, Na-Yao Zhang, 2018

机译：兰花种类叶绿体基因组的分子演变：系统发育关系和自适应进化的见解

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

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