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Convex recoloring of paths?

机译:凸的路径重着色?

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Let (T, C) be a pair consisting of a tree T and a coloring C of its vertices. We say that C is a convex coloring if, for each color c, the vertices in T with color c induce a subtree of T. The convex recoloring problem (of trees) is defined as follows. Given a pair (T, C), find a recoloring of a minimum number of vertices of T such that the resulting coloring is convex. This problem, known to be NP-hard, was motivated by problems on phylogenetic trees. We investigate here the convex recoloring problem on paths, denoted here as CRP. The main result concerns an approximation algorithm for a special case of CRP, denoted here as 2-CRP, restricted to paths in which the number of vertices of each color is at most 2, a problem known to be NP-hard. The best approximation result for CRP was obtained by Moran and Snir in 2007, who showed a 2-approximation algorithm. We show in this paper a 3/2-approximation algorithm for 2-CRP and show that its ratio analysis is tight. We also present an integer programming formulation for CRP and discuss some computational results obtained by exploring this formulation.
机译:令(T,C)为一对,由树T和其顶点的着色C组成。我们说如果对于每种颜色c,颜色为c的T中的顶点诱导出T的子树,则C为凸色。(树的)凸重着色问题定义如下。给定一对(T,C),找到最小数量的T顶点重新着色,使所得的颜色凸出。这个问题被称为NP难题,是由系统发育树上的问题引起的。我们在这里研究路径上的凸变色问题,在此表示为CRP。主要结果涉及一种CRP特殊情况的近似算法,在此表示为2-CRP,仅适用于每种颜色的顶点数最多为2的路径,这是一个已知的NP-难问题。 CRP的最佳近似结果由Moran和Snir在2007年获得,他们展示了一种2近似算法。我们在本文中展示了一种针对2-CRP的3/2逼近算法,并证明了其比率分析是严格的。我们还提出了CRP的整数编程公式,并讨论了通过探索该公式而获得的一些计算结果。

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