Improving the inter-corpora compatibility for protein annotations

Wang Y.; Kim J.-D.; S?tre R.; Pyysalo S.; Ohta T.; Tsujii J.

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Improving the inter-corpora compatibility for protein annotations

机译：提高蛋白质注释的语料库间兼容性

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Although there are several corpora with protein annotation, incompatibility between the annotations in different corpora remains a problem that hinders the progress of automatic recognition of protein names in biomedical literature. Here, we report on our efforts to find a solution to the incompatibility issue, and to improve the compatibility between two representative protein-annotated corpora: the GENIA corpus and the GENETAG corpus. In a comparative study, we improve our insight into the two corpora, and a series of experimental results show that most of the incompatibility can be removed.

机译：尽管有多个带有蛋白质注释的语料库，但是不同语料库中注释之间的不兼容性仍然是一个问题，阻碍了生物医学文献中蛋白质名称自动识别的进展。在这里，我们报告了我们的工作，以寻找解决不兼容问题的方法，并改善两个有代表性的带有蛋白质注释的语料库：GENIA语料库和GENETAG语料库。在一项比较研究中，我们提高了对这两个语料库的了解，一系列实验结果表明，可以消除大多数不兼容的情况。

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《Journal of Bioinformatics and Computational Biology》 |2010年第5期|共16页
作者
Wang Y.; Kim J.-D.; S?tre R.; Pyysalo S.; Ohta T.; Tsujii J.;
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正文语种 eng
中图分类细胞生物学;
关键词
Corpus; named entity recognition; protein annotation;

机译：语料库;命名实体识别;蛋白质注释;

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专利

1. Improving the inter-corpora compatibility for protein annotations [J] . Wang Y., Kim J.-D., S?tre R., Journal of Bioinformatics and Computational Biology . 2010,第5期

机译：提高蛋白质注释的语料库间兼容性
2. Improving N-terminal protein annotation of Plasmodium species based on signal peptide prediction of orthologous proteins [J] . Armando de Menezes Neto, Denise A Alvarenga, Ant?nio M Rezende, Malaria Journal . 2012,第S1期

机译：基于直系同源蛋白的信号肽预测改善疟原虫物种的N末端蛋白注释
3. LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins [J] . Wei Zheng, Chengxin Zhang, Qiqige Wuyun, Nucleic acids research . 2019,第W1期

机译：LOMETS2：改进的元线程服务器，用于折叠识别和基于结构的功能，用于遥距同源蛋白
4. Software Tool for Researching Annotations of Proteins (STRAP): Open-Source Software for Protein Annotation and Data Visualization [C] . Vivek Bhatia, David H. Perlman, Catherine E. Costello, American Society for Mass Spectrometry Conference on Mass Spectrometry and Allied Topics . 2009

机译：用于研究蛋白质注释（表带）注释的软件工具：用于蛋白质注释和数据可视化的开源软件
5. Strategies to Improve Protein Production of Chinese Hamster Ovary Cell Lines and Genome Annotation under the Guidance of High Throughput Omics Technology [D] . Li, Shangzhong 2019

机译：高通量组学技术指导下提高中国仓鼠卵巢细胞蛋白生产和基因组注释的策略
6. The Bologna Annotation Resource (BAR 3.0): improving protein functional annotation [O] . Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio 2017

机译：博洛尼亚注释资源（BAR 3.0）：改善蛋白质功能注释
7. Improving N-terminal protein annotation of Plasmodium species based on signal peptide prediction of orthologous proteins [O] . Armando Neto, Denise A Alvarenga, Antônio M Rezende, 2012

机译：基于直系同源蛋白的信号肽预测改善疟原虫物种的N末端蛋白注释

Improving the inter-corpora compatibility for protein annotations

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