Chaste: A test-driven approach to software development for biological modelling

Pitt-Francis J; Pathmanathan P; Bernabeu MO; Bordas R; Cooper J; Fletcher AG; Mirams GR; Murray P; Osborne JM; Walter A; Chapman SJ; Garny A; van Leeuwen IMM; Maini PK; Rodriguez B; Waters SL; Whiteley JP; Byrne HM; Gavaghan DJ

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Chaste: A test-driven approach to software development for biological modelling

机译：Chaste：一种由测试驱动的生物建模软件开发方法

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Chaste ('Cancer, heart and soft-tissue environment') is a software library and a set of test suites for computational simulations in the domain of biology. Current functionality has arisen from modelling in the fields of cancer, cardiac physiology and soft-tissue mechanics. It is released under the LGPL 2.1 licence. Chaste has been developed using agile programming methods. The project began in 2005 when it was reasoned that the modelling of a variety of physiological phenomena required both a generic mathematical modelling framework, and a generic computational/simulation framework. The Chaste project evolved from the Integrative Biology (IB) e-Science Project, an inter-institutional project aimed at developing a Suitable IT infrastructure to support physiome-level computational modelling, with a primary focus on cardiac and cancer modelling.

机译：Chaste（“癌症，心脏和软组织环境”）是一个软件库和一组测试套件，用于生物学领域的计算仿真。当前的功能来自癌症，心脏生理学和软组织力学领域的建模。它根据LGPL 2.1许可证发布。 Chaste是使用敏捷编程方法开发的。该项目始于2005年，当时有理由认为各种生理现象的建模既需要通用的数学建模框架，又需要通用的计算/模拟框架。 Chaste项目是从整合生物学（IB）电子科学项目演变而来的，该项目是一个机构间项目，旨在开发合适的IT基础架构来支持生理组水平的计算建模，主要侧重于心脏和癌症建模。

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《Computer physics communications》 |2009年第12期|共20页
作者
Pitt-Francis J; Pathmanathan P; Bernabeu MO; Bordas R; Cooper J; Fletcher AG; Mirams GR; Murray P; Osborne JM; Walter A; Chapman SJ; Garny A; van Leeuwen IMM; Maini PK; Rodriguez B; Waters SL; Whiteley JP; Byrne HM; Gavaghan DJ;
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正文语种 eng
中图分类计算机的应用;
关键词
Cardiac electrophysiology; Intestinal crypt simulation;

机译：心脏电生理;肠隐窝模拟;

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专利

1. Chaste: A test-driven approach to software development for biological modelling [J] . Pitt-Francis J, Pathmanathan P, Bernabeu MO, Computer physics communications . 2009,第12期

机译：Chaste：一种由测试驱动的生物建模软件开发方法
2. Embedded Software Development Needs a More Automated, Test-Driven Approach [J] . RTC . 2007,第2007期

机译：嵌入式软件开发需要一种更加自动化，测试驱动的方法
3. Embedded Software Development Needs a More Automated, Test-Driven Approach [J] . RTC . 2007,第2007期

机译：嵌入式软件开发需要一种更加自动化，测试驱动的方法
4. A Test-Driven Approach for Model-Based Development of Powertrain Functions [C] . Henrik Peters, Christoph Knieke, Oliver Brox, International conference on agile software development . 2014

机译：测试驱动的基于模型的动力总成功能开发
5. The effectiveness of test-driven development and refactoring techniques in computational science and engineering software development. [D] . Nantha Amornphong, Aziz. 2014

机译：测试驱动的开发和重构技术在计算科学和工程软件开发中的有效性。
6. Gsmodutils: a python based framework for test-driven genome scale metabolic model development [O] . James Gilbert, Nicole Pearcy, Rupert Norman, -1

机译：Gsmodutils：基于Python的框架用于测试驱动的基因组规模代谢模型开发
7. Chaste: A test-driven approach to software development for biological modelling [O] . Pitt-Francis, J, Pathmanathan, P, Bernabeu, MO, 2009

机译：Chaste：测试驱动的生物建模软件开发方法
8. From Details to Done. A Test-Driven Approach to Software Development [R] . Jewett, S. 2011

机译：从细节到完成。一种测试驱动的软件开发方法

Chaste: A test-driven approach to software development for biological modelling

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