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首页> 外文期刊>Computer Methods and Programs in Biomedicine: An International Journal Devoted to the Development, Implementation and Exchange of Computing Methodology and Software Systems in Biomedical Research and Medical Practice >MCF: A tool to find multi-scale community profiles in biological networks
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MCF: A tool to find multi-scale community profiles in biological networks

机译：MCF：一种在生物网络中查找多尺度社区概况的工具

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摘要

Recent developments of complex graph clustering methods have implicated the practical applications with biological networks in different settings. Multi-scale Community Finder (MCF) is a tool to profile network communities (i.e., clusters of nodes) with the control of community sizes. The controlling parameter is referred to as the scale of the network community profile. MCF is able to find communities in all major types of networks including directed, signed, bipartite, and multi-slice networks. The fast computation promotes the practicability of the tool for large-scaled analysis (e.g., protein-protein interaction and gene co-expression networks). MCF is distributed as an open-source C++ package for academic use with both command line and user interface options, and can be downloaded at http://bsdxd.cpsc.ucalgary.ca/MCF. Detailed user manual and sample data sets are also available at the project website.
机译：复杂图聚类方法的最新发展已将生物网络应用于不同环境中的实际应用。多尺度社区查找器（MCF）是一种通过控制社区规模来分析网络社区（即节点集群）的工具。控制参数称为网络社区配置文件的规模。 MCF能够在所有主要类型的网络中找到社区，包括定向，已签名，两方和多层网络。快速的计算提高了该工具用于大规模分析的实用性（例如，蛋白质-蛋白质相互作用和基因共表达网络）。 MCF是作为开放源代码的C ++软件包分发的，可在学术上使用，同时包含命令行和用户界面选项，可从http://bsdxd.cpsc.ucalgary.ca/MCF下载。项目网站上也提供了详细的用户手册和样本数据集。

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