Design of a novel biomedical signal processing and analysis tool for functional neuroimaging

Kacar Sezgin; Sakoglu Unal

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Design of a novel biomedical signal processing and analysis tool for functional neuroimaging

机译：新型功能性神经影像生物医学信号处理与分析工具的设计

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In this paper, a MATLAB-based graphical user interface (GUI) software tool for general biomedical signal processing and analysis of functional neuroimaging data is introduced. Specifically, electroencephalography (EEG) and electrocardiography (ECG) signals can be processed and analyzed by the developed tool, which incorporates commonly used temporal and frequency analysis methods. In addition to common methods, the tool also provides non-linear chaos analysis with Lyapunov exponents and entropies; multivariate analysis with principal and independent component analyses; and pattern classification with discriminant analysis. This tool can also be utilized for training in biomedical engineering education. This easy-to-use and easy-to-learn, intuitive tool is described in detail in this paper. (C) 2015 Elsevier Ireland Ltd. All rights reserved.

机译：本文介绍了一种用于一般生物医学信号处理和功能性神经影像数据分析的基于MATLAB的图形用户界面（GUI）软件工具。特别是，脑电图（EEG）和心电图（ECG）信号可以通过开发的工具进行处理和分析，该工具结合了常用的时间和频率分析方法。除了常用的方法外，该工具还提供具有Lyapunov指数和熵的非线性混沌分析。具有主成分和独立成分分析的多元分析;和判别分析进行模式分类。该工具也可以用于生物医学工程教育的培训。本文详细介绍了这种易于使用和易于学习的直观工具。（C）2015 Elsevier Ireland Ltd.保留所有权利。

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《Computer Methods and Programs in Biomedicine: An International Journal Devoted to the Development, Implementation and Exchange of Computing Methodology and Software Systems in Biomedical Research and Medical Practice》 |2016年第1期|共12页
作者
Kacar Sezgin; Sakoglu Unal;
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正文语种 eng
中图分类计算技术、计算机技术;
关键词
Biomedical signal processing and analysis; EEG; ECG; Graphical user interface; Non-linear time-series analysis; Multivariate analysis;

机译：生物医学信号处理与分析;脑电图;心电图;图形用户界面;非线性时间序列分析;多元分析;

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1. Design of a novel biomedical signal processing and analysis tool for functional neuroimaging [J] . Kacar Sezgin, Sakoglu Unal Computer Methods and Programs in Biomedicine: An International Journal Devoted to the Development, Implementation and Exchange of Computing Methodology and Software Systems in Biomedical Research and Medical Practice . 2016,第1期

机译：新型功能性神经影像生物医学信号处理与分析工具的设计
2. Functional optical signal analysis: a software tool for near-infrared spectroscopy data processing incorporating statistical parametric mapping [J] . Peck H. Koh, Daniel E. Glaser, Guillaume Flandin, Journal of biomedical optics . 2007,第6期

机译：功能性光信号分析：结合统计参数映射的近红外光谱数据处理软件工具
3. Functional Data Analysis and Design of Experiments as Efficient Tools to Determine the Dynamical Design Space of Food and Biotechnological Batch Processes [J] . Food and bioprocess technology . 2020,第6期

机译：实验的功能数据分析和设计作为确定食品和生物技术批处理流程的动态设计空间的有效工具
4. Biomedic Signal Processing and Analysis of Neuroimaging from fNIRS for Human Pain [C] . Xu Huang, Raul Fernandez Rojas, Allan C. Madoc, International Conference on Communication Software and Networks . 2018

机译：fNIRS对人类疼痛的生物医学信号处理和神经影像分析
5. Wavelet transforms for the analysis of biomedical signals: Noise removal and processing of biomechanical and electromyography signals. [D] . Wachowiak, Mark Paul. 1997

机译：用于生物医学信号分析的小波变换：噪声消除以及生物力学和肌电信号的处理。
6. Photo Processing for Biomedical Hydrogels Design and Functionality: A Review [O] . Hongyi Yao, Jieqiong Wang, Shengli Mi 2018

机译：生物医学水凝胶的设计和功能的照片处理：审查。
7. : "This paper deals with the functionality of the flaked stone assemblages from several Neolithic sites of the NE of the Iberian Peninsula. The chronological framework ranges from the mid-6th to the mid-4th millennium cal. BCE, which corresponds to the Early and Middle Neolithic. This long period ranges from the arrival of the first farming communities in the Iberian Peninsula, around 5600-5500 cal. BCE, to 3600-3500 cal. BCE, two millennia later, when Neolithic communities had stably occupied most of the available territory, from the mountainous areas of the Pyrenees to the coastal areas of the Mediterranean.In this context, the NE of the Iberian Peninsula is one of the areas where a major number of use-wear analyses have been carried out, especially for what concerns the Neolithic period. This is mainly due to the interest shown by the directors of the excavations and by the Spanish use-wear specialists as well; both participated and cooperated in order to enlarge the number of contexts studied, making the NE of the Iberian Peninsula one of the areas of Europe with the largest number of ‘functional studies’. As a result, today we have a reliable picture of the type of lithic tools used by the first farming groups, how they were used, and which needs they were satisfying.The methodology employed for this type of analysis is today broadly shared by most use-wear specialists. A stereoscopic microscope is used together with a reflected-light microscope for the analysis of the archaeological specimens. Afterwards, the observed use-wear traces are compared with the traces from experimental tools. This study primarily made use of the tools preserved at the ‘Traceoteque’ of the Institución Milà y Fontanals of the CSIC of Barcelona.This paper presents the results obtained for the different types of analysed sites and the relative lithic assemblages. In this way, tools from different contexts are compared: open-air sites, caves and rock-shelters, pit-sites, burials, and mining sites. Such a diversity of contexts allowed for the exploration of the existence of recurrences and differences in the functionality of the lithic tools from one site to another. The results obtained have also provided information on some aspects related to the economic processes carried out at the different sites, caves, rock-shelters and open-air contexts. It has been possible to gain fresh data on the types of tasks carried out and their relative importance for each site, their relation with the geographical and environmental context and the natural resources available there. In addition, analysing tools recovered from burials – mainly individual inhumations – provided information on the relationships between the buried individuals and the working tools, in particular exploring the relationships between sex and age patterns and the types of tools deposited as goods.In conclusion, use-wear analysis allowed for the exploration of a variety of issues; from technical aspects related to the production and management of the lithic resources to social aspects related to the subsistence activities and the individuals that carried them out." [O] . Gibaja Bao, Juan Francisco, Mazzucco, Niccolo 2015

机译：：“本文研究了伊比利亚半岛东北部几个新石器时代遗址的片状石材组合的功能。时间框架从公元前6世纪中叶到4世纪中叶，分别对应于早期和早期。新石器时代中期，这段时间的长短是从伊比利亚半岛的第一个农业社区到来，大约在公元前5600-5500 cal，到了两千年后的3600-3500 BCE，当时新石器时代的社区稳定地占据了大部分可用土地。从比利牛斯山脉山区到地中海沿岸地区。在这种情况下，伊比利亚半岛东北部是进行过大量使用磨损分析的地区之一，尤其是在关注方面新石器时代，这主要是由于发掘负责人和西班牙使用服装专家表现出的浓厚兴趣；他们参与和合作以扩大孔蒂的数量xts进行了研究，使伊比利亚半岛的NE成为“功能研究”数量最多的欧洲地区之一。结果，今天我们可以可靠地了解第一批耕作小组使用的石器工具的类型，使用方法以及它们满足的需求。今天，大多数使用方法广泛共享用于这种类型的分析的方法穿专家。立体显微镜与反射光显微镜一起用于分析考古样本。然后，将观察到的使用磨损痕迹与实验工具的痕迹进行比较。这项研究主要利用了巴塞罗那CSIC的米拉·丰塔纳尔研究所的“ Traceoteque”中保存的工具。本文介绍了针对不同类型的分析地点和相对石器组合所获得的结果。通过这种方式，可以比较来自不同环境的工具：露天场所，洞穴和岩石避难所，露天场所，埋葬场所和采矿场所。如此多样的上下文允许探索重复性的存在以及从一个站点到另一个站点的石器工具的功能差异。所获得的结果还提供了与在不同地点，洞穴，避难所和露天环境中进行的经济过程有关的某些方面的信息。可以获得有关所执行任务的类型及其对每个站点的相对重要性，它们与地理和环境环境以及那里可用自然资源的关系的新数据。此外，对从墓葬中回收的工具（主要是个人遗体）进行分析，可提供有关被掩埋的个体与工作工具之间关系的信息，尤其是探索性别与年龄模式之间的关系以及作为商品存放的工具的类型。磨损分析允许探索各种问题；从与石器资源的生产和管理有关的技术方面到与自给活动及其实施者有关的社会方面。”
8. Design Tools and Architectures for Dedicated Digital Signal Processing (DSP) Processors. [R] . Parhi, K. K. 1996

机译：专用数字信号处理（Dsp）处理器的设计工具和架构。

Design of a novel biomedical signal processing and analysis tool for functional neuroimaging

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