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首页> 外文期刊>The Journal of Chemical Physics >Equilibrium sampling of self-associating polymer solutions:A parallel selective tempering approach
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Equilibrium sampling of self-associating polymer solutions:A parallel selective tempering approach

机译:自缔合聚合物溶液的平衡取样:平行选择性回火方法

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摘要

We present a novel simulation algorithm based on tempering a fraction of relaxation-limiting interactions to accelerate the process of obtaining uncorrelated equilibrium configurations of self-associating polymer solutions.This approach consists of tempering (turning off) the attractive interactions for a fraction of self-associating groups determined by a biasing field h.A number of independent configurations (replicas) with overlapping Hamiltonian distributions in the expanded (NVTh) ensemble with constant NVT but different biasing fields,forming a chain of Hamiltonians,were simulated in parallel with occasional attempts to exchange the replicas associated with adjacent fields.Each field had an associated distribution of tempered interactions,average fraction of tempered interactions,and structural decorrelation time.Tempering parameters (number of replicas,fields,and exchange frequencies) were chosen to obtain the highest efficiency in sampling equilibrium configurations of a self-association polymer solution based on short serial simulation runs and a statistical model.Depending on the strength of the relaxation-limiting interactions,system size,and thermodynamic conditions,the algorithm can be orders of magnitude more efficient than conventional canonical simulation and is superior to conventional temperature parallel tempering.
机译:我们提出了一种新的基于回火的松弛限制相互作用的模拟算法,以加速获得自缔合聚合物溶液不相关的平衡构型的过程。由偏置场确定的关联基团在具有恒定NVT的扩展(NVTh)集合中具有重叠汉密尔顿分布的独立构型(副本)的数量,但具有不同的偏置场,形成了汉密尔顿链,并与偶尔尝试交换与相邻场相关联的副本自我配置基于短序列模拟运行和统计模型的缔合聚合物溶液。取决于松弛限制相互作用的强度,系统大小和热力学条件,该算法的效率可以比常规规范模拟高几个数量级,并且优于常规规范模拟温度平行回火。

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