BrAPI-an application programming interface for plant breeding applications

Selby Peter; Abbeloos Rafael; Backlund Jan Erik; Salido Martin Basterrechea; Bauchet Guillaume; Benites-Alfaro Omar E.; Birkett Clay; Calaminos Viana C.; Carceller Pierre; Cornut Guillaume; Costa Bruno Vasques; Edwards Jeremy D.; Finkers Richard; Gao Star Yanxin; Ghaffar Mehmood; Glaser Philip; Guignon Valentin; Hok Puthick; Kilian Andrzej; Koenig Patrick; Lagare Jack Elendil B.; Lange Matthias; Laporte Marie-Angelique; Larmande Pierre; LeBauer David S.; Lyon David A.; Marshall David S.; Matthews Dave; Milne Iain; Mistry Naymesh; Morales Nicolas; Mueller Lukas A.; Neveu Pascal; Papoutsoglou Evangelia; Pearce Brian; Perez-Masias Ivan; Pommier Cyril; Ramirez-Gonzalez Ricardo H.; Rathore Abhishek; Raquel Angel Manica; Raubach Sebastian; Rife Trevor; Robbins Kelly; Rouard Mathieu; Sarma Chaitanya; Scholz Uwe; Sempere Guilhem; Shaw Paul D.; Simon Reinhard; Soldevilla Nahuel; Stephen Gordon; Sun Qi; Tovar Clarysabel; Uszynski Grzegorz; Verouden Maikel

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BrAPI-an application programming interface for plant breeding applications

机译：BRAPI-植物育种应用的应用程序编程界面

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Motivation: Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data are often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge.

机译：动机：现代基因组育种方法严重依赖于非常大量的表型和基因分型数据，在有效的数据管理和整合中提出了新的挑战。最近，数据集的大小和复杂性具有显着增加，结果通常存储在多个系统上。随着感兴趣的分析越来越需要从各种来源聚合数据集，不同系统之间的数据交换成为挑战。

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《Bioinformatics》 |2019年第20期|共9页
作者
Selby Peter; Abbeloos Rafael; Backlund Jan Erik; Salido Martin Basterrechea; Bauchet Guillaume; Benites-Alfaro Omar E.; Birkett Clay; Calaminos Viana C.; Carceller Pierre; Cornut Guillaume; Costa Bruno Vasques; Edwards Jeremy D.; Finkers Richard; Gao Star Yanxin; Ghaffar Mehmood; Glaser Philip; Guignon Valentin; Hok Puthick; Kilian Andrzej; Koenig Patrick; Lagare Jack Elendil B.; Lange Matthias; Laporte Marie-Angelique; Larmande Pierre; LeBauer David S.; Lyon David A.; Marshall David S.; Matthews Dave; Milne Iain; Mistry Naymesh; Morales Nicolas; Mueller Lukas A.; Neveu Pascal; Papoutsoglou Evangelia; Pearce Brian; Perez-Masias Ivan; Pommier Cyril; Ramirez-Gonzalez Ricardo H.; Rathore Abhishek; Raquel Angel Manica; Raubach Sebastian; Rife Trevor; Robbins Kelly; Rouard Mathieu; Sarma Chaitanya; Scholz Uwe; Sempere Guilhem; Shaw Paul D.; Simon Reinhard; Soldevilla Nahuel; Stephen Gordon; Sun Qi; Tovar Clarysabel; Uszynski Grzegorz; Verouden Maikel;
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作者单位

Cornell Univ Sch Integrat Plant Sci Plant Breeding &

Genet Sect Ithaca NY 14853 USA;

VIB B-9052 Ghent Belgium;

CIMMYT IBP Texcoco 56237 Mexico;

Leibniz Inst Plant Genet &

Crop Plant Res IPK D-06466 Gatersleben Germany;

Boyce Thompson Inst Plant Res Ithaca NY 14853 USA;

Int Potato Ctr CIP Lima 15000 Peru;

USDA ARS Ithaca NY 14853 USA;

IRRI Los Banos 4031 Laguna Philippines;

Univ Montpellier Montpellier SupAgro AGAP CIRAD INRA F-34398 Montpellier France;

Univ Paris Saclay INRA URGI F-78026 Versailles France;

Inst Biol Expt &

Technol iBET P-2780157 Oeiras Portugal;

USDA ARS Stuttgart AR 72160 USA;

Wageningen Univ &

Res Dept Plant Breeding NL-6708PB Wageningen Netherlands;

Cornell Univ Inst Biotechnol Ithaca NY 14853 USA;

Leibniz Inst Plant Genet &

Crop Plant Res IPK D-06466 Gatersleben Germany;

Cornell Univ Inst Biotechnol Ithaca NY 14853 USA;

Biovers Int F-34397 Montpellier France;

Diver Arrays Technol Bruce 2617 Australia;

Diver Arrays Technol Bruce 2617 Australia;

Leibniz Inst Plant Genet &

Crop Plant Res IPK D-06466 Gatersleben Germany;

IRRI Los Banos 4031 Laguna Philippines;

Leibniz Inst Plant Genet &

Crop Plant Res IPK D-06466 Gatersleben Germany;

Biovers Int F-34397 Montpellier France;

Univ Montpellier IRD DIADE F-34394 Montpellier France;

Univ Arizona Coll Agr &

Life Sci Tucson AZ 85721 USA;

Boyce Thompson Inst Plant Res Ithaca NY 14853 USA;

James Hutton Inst Informat &

Computat Sci Dundee DD2 5DA Scotland;

USDA ARS Ithaca NY 14853 USA;

James Hutton Inst Informat &

Computat Sci Dundee DD2 5DA Scotland;

LeafNode Technol Auckland 0600 New Zealand;

Boyce Thompson Inst Plant Res Ithaca NY 14853 USA;

Boyce Thompson Inst Plant Res Ithaca NY 14853 USA;

Univ Montpellier Montpellier SupAgro INRA MISTEA F-34060 Montpellier France;

Wageningen Univ &

Res Dept Plant Breeding NL-6708PB Wageningen Netherlands;

Diver Arrays Technol Bruce 2617 Australia;

Int Potato Ctr CIP Lima 15000 Peru;

Univ Paris Saclay INRA URGI F-78026 Versailles France;

Wageningen Univ &

Res Dept Plant Breeding NL-6708PB Wageningen Netherlands;

Int Crops Res Inst Semi Arid Trop Hyderabad 502324 Andhra Pradesh India;

IRRI Los Banos 4031 Laguna Philippines;

James Hutton Inst Informat &

Computat Sci Dundee DD2 5DA Scotland;

Kansas State Univ Dept Plant Pathol Throckmorton Hall Manhattan KS 66506 USA;

Cornell Univ Sch Integrat Plant Sci Plant Breeding &

Genet Sect Ithaca NY 14853 USA;

Biovers Int F-34397 Montpellier France;

Int Crops Res Inst Semi Arid Trop Hyderabad 502324 Andhra Pradesh India;

Univ Montpellier Montpellier SupAgro AGAP CIRAD INRA F-34398 Montpellier France;

James Hutton Inst Informat &

Computat Sci Dundee DD2 5DA Scotland;

Patranca EIRL Lima 12175 Peru;

CIMMYT IBP Texcoco 56237 Mexico;

James Hutton Inst Informat &

Computat Sci Dundee DD2 5DA Scotland;

Cornell Univ Inst Biotechnol Ithaca NY 14853 USA;

CIMMYT IBP Texcoco 56237 Mexico;

Diver Arrays Technol Bruce 2617 Australia;

Wageningen Univ &

Res Biometris NL-6708 PB Wageningen Netherlands;

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正文语种 eng
中图分类生物工程学（生物技术）;
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专利

1. BrAPI-an application programming interface for plant breeding applications [J] . Selby Peter, Abbeloos Rafael, Backlund Jan Erik, Bioinformatics . 2019,第20期

机译：BRAPI-植物育种应用的应用程序编程界面
2. A Fully Implantable, Programmable and Multimodal Neuroprocessor for Wireless, Cortically Controlled Brain-Machine Interface Applications [J] . Fei Zhang, Mehdi Aghagolzadeh, Karim Oweiss Journal of signal processing systems for signal, image, and video technology . 2012,第3期

机译：适用于无线皮质控制脑机接口应用的完全可植入，可编程和多模式神经处理器
3. Program R: applications in plant breeding [J] . Luiz Alexandre Peternelli Crop Breeding and Applied Biotechnology . 2011,第spe期

机译：计划R：在植物育种中的应用
4. Use of the PlantPredict Application Programming Interface for Automating Energy Prediction-Based Analyses [C] . Stephen Kaplan, Ramsey Callaway, Lauren Ngan, World Conference on Photovoltaic Energy Conversion;European Photovoltaic Solar Energy Conference;Photovoltaic Science and Engineering Conference;IEEE Photovoltaic Specialist Conference . 2018

机译：使用PlantPredict应用程序编程接口自动进行基于能量预测的分析
5. Applications of Genomewide Selection in a New Plant Breeding Program [D] . Neyhart, Jeffrey L. 2019

机译：基因组选择在新植物育种计划中的应用
6. BrAPI—an application programming interface for plant breeding applications [O] . Peter Selby, Rafael Abbeloos, Jan Erik Backlund, -1

机译：BrAPI-用于植物育种应用程序的应用程序编程接口
7. Development and applications of Plabsoft : a computer program for population genetic data analyses and simulations in plant breeding [O] . Maurer Hans Peter 2008

机译：Plabsoft的开发和应用：用于植物育种中种群遗传数据分析和模拟的计算机程序
8. New Developments in Biotechnology: Patenting Life. Contractor Documents, Part 3. Agricultural Applications and the Economic Impact of Patents on Plant Breeding [R] . Patterson, R. J. 1988

机译：生物技术的新发展：专利生命。承包商文件，第3部分。农业应用和专利对植物育种的经济影响

BrAPI-an application programming interface for plant breeding applications

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