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The Supramolecular Synthon Approach to Crystal Structure Prediction

机译:超分子合成子方法预测晶体结构

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A new approach has been proposed for the ab initio crystal structure prediction of small organic molecules. This exercise forms a part of the recent blind test on crystal structure prediction conducted by the Cambridge Crystallographic Data Centre. The method uses as a starting point lists of low energy structures generated by an exhaustive computational procedure, namely, the Polymorph Predictor program in Cerius~2. Such computational procedures take into account only the enthalpic factors in crystallization. A further difficulty is that information relating to crystallization kinetics is very hard to obtain directly. However, such kinetic information is implicitly contained in the experimental structures that are found in crystallographic databases. Therefore, in our approach, the low energy structures obtained in the Polymorph Predictor program are reranked after consideration of experimental structures of structurally similar molecules. Operationally, this is most conveniently carried out after identification of possible supramolecular synthons in the Cambridge Structural Database. These synthons are representative structural units that convey critical information that relates isolated molecules with their resulting crystal structures. Of the three molecules in the blind test, the present approach was fully successful for one, but only of limited utility in the two others. Reasons for this variability of success are given.
机译:已经提出了一种新的方法来预测小有机分子的从头算晶体结构。该练习是剑桥晶体学数据中心最近对晶体结构预测进行盲测的一部分。该方法以穷举计算程序(即Cerius〜2中的Polymorph Predictor程序)生成的低能结构列表作为起点。这样的计算程序仅考虑结晶中的焓因子。另一个困难是,很难直接获得与结晶动力学有关的信息。但是,这种动力学信息隐含在晶体学数据库中发现的实验结构中。因此,在我们的方法中,在考虑结构相似的分子的实验结构后,对“多态预测器”程序中获得的低能结构进行了重新排名。在操作上,这是在剑桥结构数据库中识别出可能的超分子合成子之后最方便地进行的。这些合成子是代表性的结构单元,可传达与分离的分子及其生成的晶体结构相关的关键信息。在盲法测试的三种分子中,本方法仅对一种完全成功,但对另外两种仅有限的实用性。给出了这种成功可变性的原因。

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