Application of the DBSCAN Algorithm to Detect Hydrophobic Clusters in Protein Structures

Lashkov A. A.; Rubinsky S. V.; Eistrikh-Heller P. A.

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Application of the DBSCAN Algorithm to Detect Hydrophobic Clusters in Protein Structures

机译：DBSCAN算法在蛋白质结构中检测疏水簇的应用

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Hydrophobic cores and hydrophobic clusters play a key role in globular protein folding, providing a framework for functionally important amino acid residues of proteins and enzymes. A program was developed for clustering amino acid residues in protein structures, which takes into account their hydrophobicity and utilizes the DBSCAN algorithm. The program is described and its scope and applicability are outlined.

机译：疏水性核和疏水簇在球状蛋白质折叠中发挥着关键作用，为功能上重要的蛋白质和酶的氨基酸残基提供了一种框架。开发了一种用于聚类蛋白质结构中氨基酸残基的程序，这考虑了它们的疏水性并利用了DBSCAN算法。描述了该程序，概述了其范围和适用性。

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《Crystallography reports》 |2019年第3期|共9页
作者
Lashkov A. A.; Rubinsky S. V.; Eistrikh-Heller P. A.;
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Russian Acad Sci Shubnikov Inst Crystallog Fed Sci Res Ctr Crystallog &

Photon Moscow 119333 Russia;

Russian Acad Sci Shubnikov Inst Crystallog Fed Sci Res Ctr Crystallog &

Photon Moscow 119333 Russia;

Russian Acad Sci Shubnikov Inst Crystallog Fed Sci Res Ctr Crystallog &

Photon Moscow 119333 Russia;

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正文语种 eng
中图分类晶体学;
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1. Application of the DBSCAN Algorithm to Detect Hydrophobic Clusters in Protein Structures [J] . Lashkov A. A., Rubinsky S. V., Eistrikh-Heller P. A. Crystallography reports . 2019,第3期

机译：DBSCAN算法在蛋白质结构中检测疏水簇的应用
2. A new protein folding algorithm based on hydrophobic compactness: Rigid unconnected secondary structure iterative assembly (RUSSIA). II: Applications [J] . Znamenskiy D., Le Tuan K., Mornon JP., Protein Engineering . 2003,第12期

机译：一种基于疏水性紧密度的新蛋白质折叠算法：刚性非连接二级结构迭代装配（RUSSIA）。二：应用
3. Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins [J] . Akinori Sarai, Shandar Ahmad Nucleic acids research . 2004,第suppla2期

机译：Qgrid：用于检测蛋白质中带电和疏水区域的聚类工具
4. Fast protein network clustering algorithm: a new approach for clustering protein-protein interaction networks to detect functional modules [C] . Rahman Mohammad Shamsur, Chowdhury Nafisa, Islam Mohammad Shahedul, International Conference on Advances in Electrical Engineering . 2013

机译：快速蛋白质网络聚类算法：蛋白质-蛋白质相互作用网络聚类以检测功能模块的新方法
5. NMR data management for structural genomics: Applications in the structure determination and functional characterization of iron-sulfur cluster bioassembly proteins. [D] . Baran, Michael. 2005

机译：用于结构基因组学的NMR数据管理：在铁硫簇生物组装蛋白的结构确定和功能表征中的应用。
6. Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins [O] . Shandar Ahmad, Akinori Sarai 2004

机译：Qgrid：用于检测蛋白质中带电和疏水区域的聚类工具
7. Shape investigations of structures formed by the self-assembly of aromatic amino acids using the Density-Based Spatial Clustering of Applications with Noise (DBSCAN) algorithm [O] . 2021

机译：使用噪声（DBSCAN）算法的密度基空间聚类，由芳香族氨基酸自组装形成的结构的形状研究
8. Solving the Protein Structure Prediction Problem With Fast Messy Genetic Algorithms (Scaling the Fast Messy Genetic Algorithm to Medium-Sized Peptides by Detecting Secondary Structures) [R] . Michaud, S. R. 2001

机译：用快速遗传算法求解蛋白质结构预测问题（通过检测二级结构将快速遗传算法扩展到中等大小的肽）

Application of the DBSCAN Algorithm to Detect Hydrophobic Clusters in Protein Structures

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