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The complete genome sequence of apple rootstock virus A, a novel nucleorhabdovirus identified in apple rootstocks

机译:苹果砧木病毒A的完整基因组序列,苹果砧木中鉴定的新型核心窝病毒

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摘要

We report the complete genome sequence of a novel nucleorhabdovirus, apple rootstock virus A (ApRVA), isolated from Malus spp. in South Korea. ApRVA has a 14,043-nt single-stranded negative-sense RNA genome. In the antigenome sense, it contains seven open reading frames, encoding the putative nucleocapsid protein, phosphoprotein, cell-to-cell movement protein, matrix protein, glycoprotein, RNA-dependent RNA polymerase, and an additional hypothetical protein, the gene for which is located between the genes for the matrix protein and glycoprotein. The complete genome sequence of ApRVA showed 47.45% nucleotide sequence identity to that of black currant-associated rhabdovirus 1. The genome organization, phylogenetic relationships, and sequence similarities to other nucleorhabdoviruses suggest that ApRVA is a new member of the genus Nucleorhabdovirus.
机译:我们报告了新型核心小病毒,苹果砧木病毒A(APRVA)的完整基因组序列,与Malus SPP分离。 在韩国。 APRVA具有14,043-NT单链的负面感觉RNA基因组。 在抗原组合中,它含有七个开放阅读框架,编码推定的核衣壳蛋白,磷蛋白,细胞对细胞运动蛋白,基质蛋白,糖蛋白,RNA依赖性RNA聚合酶以及额外的假设蛋白质,是其中的基因 位于基质蛋白和糖蛋白的基因之间。 APRVA的完整基因组序列显示出47.45%的核苷酸序列同一性与黑醋栗相关的rhabdovirus1的那种。基因组组织,系统发育关系和其他核瘤病毒的序列相似性表明,APRVA是Nucleorhabdovirus的新成员。

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  • 来源
    《Archives of virology》 |2019年第10期|共4页
  • 作者单位

    Korea Res Inst Biosci &

    Biotechnol Plant Syst Engn Res Ctr Daejeon 34141 South Korea;

    Korea Res Inst Biosci &

    Biotechnol Plant Syst Engn Res Ctr Daejeon 34141 South Korea;

    Chonbuk Natl Univ Coll Agr Life Sci Dept Agr Biol Jeonju 54896 South Korea;

    Natl Inst Hort &

    Herbal Sci RDA Hort &

    Herbal Crop Environm Div Wonju 55365 South Korea;

    Kyungpook Natl Univ Coll Agr &

    Life Sci Sch Appl Biosci Daegu 41566 South Korea;

    Korea Res Inst Biosci &

    Biotechnol Plant Syst Engn Res Ctr Daejeon 34141 South Korea;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 医学微生物学(病原细菌学、病原微生物学);
  • 关键词

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