A DIMENSIONLESS FIT MEASURE FOR PHYLOGENETIC DISTANCE TREES

Manuel Gil; Christophe Dessimoz; Gaston H. Gonnet

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A DIMENSIONLESS FIT MEASURE FOR PHYLOGENETIC DISTANCE TREES

机译：系统发育距离树的无量纲拟合度量

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摘要

We present a dimensionless fit index for phylogenetic trees that have been constructed from distance matrices. It is designed to measure the quality of the fit of the data to a tree in absolute terms, independent of linear transformations on the distance matrix. The index can be used as an absolute measure to evaluate how well a set of data fits to a tree, or as a relative measure to compare different methods that are expected to produce the same tree. The usefulness of the index is demonstrated in three examples.

机译：我们为已经由距离矩阵构成的系统发育树提供了无量纲的拟合指标。它旨在以绝对术语测量数据拟合到树的质量，与距离矩阵上的线性变换无关。索引可以用作绝对措施，以评估一组数据适合树的一组数据，或者作为比较预期产生同一树的不同方法的相对度量。在三个例子中证明了指数的有用性。

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来源
《Journal of Bioinformatics and Computational Biology》 |2005年第6期|共12页
作者
Manuel Gil; Christophe Dessimoz; Gaston H. Gonnet;
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作者单位

Department of Computer Science ETH Zurich Zurich 8092 Switzerland;

Department of Computer Science ETH Zurich Zurich 8092 Switzerland;

Department of Computer Science ETH Zurich Zurich 8092 Switzerland;

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原文格式 PDF
正文语种 eng
中图分类细胞生物学;
关键词
Phylogenetic trees; distance tree; least squares; dimensionless number; fit index;

机译：系统发育树;距离树;最小二乘;无量纲数;适合指数;

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专利

1. A DIMENSIONLESS FIT MEASURE FOR PHYLOGENETIC DISTANCE TREES [J] . Manuel Gil, Christophe Dessimoz, Gaston H. Gonnet Journal of Bioinformatics and Computational Biology . 2005,第6期

机译：系统发育距离树的无量纲拟合度量
2. Assessment of protein distance measures and tree-building methods for phylogenetic tree reconstruction [J] . Hollich V, Milchert L, Arvestad L, Molecular biology and evolution . 2005,第11期

机译：进化树重建中蛋白质距离测度和树木构建方法的评估
3. A new sequence distance measure for phylogenetic tree construction. [J] . Otu HH, Sayood K Bioinformatics . 2003,第16期

机译：一种用于系统发育树构建的新序列距离度量。
4. A DNA sequence distance measure approach for phylogenetic tree construction [C] . Dan Wei, Qingshan Jiang IEEE 5th International Bio-Inspired Computing: Theories and Applications . 2010

机译：用于构建系统树的DNA序列距离测量方法
5. Integrating Community Phylogenetics and Phylogenetic Beta Diversity to Understand Amazonian Trees Community Assembly: A Biogeographical and Conservation Approach [D] . Guevara Andino, Juan Ernesto 2017

机译：整合社区系统发育学和系统发育β多样性以了解亚马逊树木社区大会：一种生物地理学和自然保护方法
6. A strict upper bound for the partition distance and the cluster distance of phylogenetic trees for each fixed pair of topological trees [O] . Martin Middendorf, Nicolas Wieseke 2012

机译：每个固定拓扑树对的系统树的划分距离和簇距离的严格上限
7. Assessment of Protein Distance Measures and Tree-Building Methods for Phylogenetic Tree Reconstruction [O] . Volker Hollich, Lena Milchert, Lars Arvestad, 2005

机译：蛋白质距离测量和系统源树改造树木建筑方法的评估

A DIMENSIONLESS FIT MEASURE FOR PHYLOGENETIC DISTANCE TREES

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