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Whole genome sequence of Diaporthe capsici, a new pathogen of walnut blight

机译：全基因组序列岩浆康西比，核桃枯萎的新病原体

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摘要

Many fungi in the Diaporthe genus across the world are pathogenic. Diaporthe capsici. is a pathogenic fungus that can infect peppers and walnuts, causing their death. The aim of this study was to develop a genomic resource to provide substantial data and a theoretical basis for research on molecular pathogenesis, transcriptome, proteome, and metabonome of D. capsici. The whole genome of D. capsici was sequenced using the PacBio RSII sequencing platform, and functional annotation was performed using different public databases. The genome was found to be 57.56 Mb in size, with an N50 contig size of 5,171,887 bp, and encodes 14,425 putative genes. This is the first genome-scale assembly and annotation for D. capsici, which is the eighth species in Diaporthe to be sequenced.
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  • 来源
    《Genomics》 |2020年第5期|共11页
  • 作者

    Fang Xinmei; Qin Kai; Li Shujiang; Han Shan; Zhu Tianhui;

  • 作者单位

    Sichuan Agr Univ Coll Forestry 211 Huiming Rd Chengdu 611130 Sichuan Peoples R China;

    Sichuan Agr Univ Coll Forestry 211 Huiming Rd Chengdu 611130 Sichuan Peoples R China;

    Sichuan Agr Univ Coll Forestry 211 Huiming Rd Chengdu 611130 Sichuan Peoples R China;

    Sichuan Agr Univ Coll Forestry 211 Huiming Rd Chengdu 611130 Sichuan Peoples R China;

    Sichuan Agr Univ Coll Forestry 211 Huiming Rd Chengdu 611130 Sichuan Peoples R China;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 医学遗传学;
  • 关键词

    Whole genome sequencing; Diaporthe capsici; Pathogenic fungus; Functional annotation;

    机译：全基因组测序;Dioporthe Capsici;致病性真菌;功能诠释;

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