De novo assembly and characterization of the transcriptome of the northern mauxia shrimp Acetes chinensis

Huang Hao; Li Zengpeng; Chen Mingliang

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De novo assembly and characterization of the transcriptome of the northern mauxia shrimp Acetes chinensis

机译：乌兹西亚北部虾虾的转录组的德诺族组装和表征

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摘要

Northern mauxia shrimp Acetes chinensis, a major fished shrimp in East Asia, serves as an important marine resource in food industry. Here, we collected wild A. chinensis samples and conducted RNA-Seq experiment using different body parts to obtain the transcriptome profile using Illumina HiSeq technology. After de novo assembly, 63,396 transcripts were obtained, and 41,898 transcripts were functionally annotated in reference databases. We further identified a number of well-known transcription factors that are possibly associated with environmental changes. This transcriptome dataset could be immediately used for gene discovery and functional characterization. Our study will shed light on the investigation of molecular adaption of A. chinensis to the changing marine environment.

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来源
《Marine genomics》 |2019年第1期|共5页
作者
Huang Hao; Li Zengpeng; Chen Mingliang;
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作者单位

Minist Nat Resources Inst Oceanog 3 Lab Marine Biol &

Ecol Xiamen 361005 Fujian Peoples R China;

Minist Nat Resources Inst Oceanog 3 State Key Lab Breeding Base Marine Genet Resource Xiamen 361005 Fujian Peoples R China;

Minist Nat Resources Inst Oceanog 3 State Key Lab Breeding Base Marine Genet Resource Xiamen 361005 Fujian Peoples R China;

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原文格式 PDF
正文语种 eng
中图分类遗传学;
关键词
Acetes chinensis; Northern mauxia shrimp; Transcriptome; Transcription factor;

机译：灰烬中华鳖;乳头北部;转录组;转录因子;

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5. Isolation and characterization of novel microsatellite markers for the northern mauxia shrimp, Acetes chinensis, using pyrosequencing [J] . Kang Jung-Ha, Kang Hyun-Sook, Noh Eun-Soo, Marine genomics . 2014,第Pta1期

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6. Rapid Origin Determination of the Northern Mauxia Shrimp (Acetes chinensis) Based on Allele Specific Polymerase Chain Reaction of Partial Mitochondrial 16S rRNA Gene [J] . Kang Jung-Ha, Noh Eun-Soo, Park Jung-Youn, Asian-Australasian Journal of Animal Sciences . 2015,第4期

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De novo assembly and characterization of the transcriptome of the northern mauxia shrimp Acetes chinensis

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