Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6

Kallies Rene; Kiesel Baerbel; Schmidt Matthias; Ghanem Nawras; Zopfi Jakob; Hackermueller Joerg; Harms Hauke; Wick Lukas Y.; Chatzinotas Antonis

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Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6

机译：完全基因组序列的伪甲腺炎病毒VB_PSPP-H6 / 1，其感染伪甲腺炎SP。菌株H6

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摘要

Pseudoalteromonas is a bacterial genus widely distributed in marine ecosystems. We present the genome characterization of the lytic Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6. The virus and its host were both isolated from seawater collected from the North Sea near the island Helgoland, Germany, in the 1970s. The virus particle consists of a similar to 56 nm diameter icosahedral capsid and a short tail with a length of similar to 15 nm. The linear dsDNA genome has a size of 36,753 bp and a GC content of 45%. Genome organization was related to P22-like viruses with approximately 40% nucleotide identity to other P22-like viruses over the whole genome. These findings, together with the phylogenetic analysis, suggest Pseudoalteromonas virus vB_PspP-H6/1 is a marine P22-like virus. The study of such viruses originating from a host so far not known for P22-like viruses will extend the information about origin and evolution of P22-like viruses.

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来源
《Marine genomics》 |2019年第1期|共5页
作者
Kallies Rene; Kiesel Baerbel; Schmidt Matthias; Ghanem Nawras; Zopfi Jakob; Hackermueller Joerg; Harms Hauke; Wick Lukas Y.; Chatzinotas Antonis;
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作者单位

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Isotope Biogeochem ProVis Ctr Chem Microscopy D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

Univ Basel Dept Environm Sci Aquat &

Stable Isotope Biogeoch CH-4056 Basel Switzerland;

UFZ Helmholtz Ctr Environm Res Young Investigators Grp Bioinformat &

Transcript D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

UFZ Helmholtz Ctr Environm Res Dept Environm Microbiol D-04318 Leipzig Germany;

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原文格式 PDF
正文语种 eng
中图分类遗传学;
关键词
Pseudoalteromonas virus; Podoviridae; AquaDiva; Marine phage; Virus; Genome;

机译：pseudoalteromonas病毒;podoviridae;aquadiva;海洋噬菌体;病毒;基因组;

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Complete genome sequence of Pseudoalteromonas virus vB_PspP-H6/1 that infects Pseudoalteromonas sp. strain H6

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