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首页> 外文期刊>Briefings in bioinformatics >Next-generation sequencing: a challenge tomeet the increasing demand for training workshops in Australia
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Next-generation sequencing: a challenge tomeet the increasing demand for training workshops in Australia

机译：下一代测序：满足澳大利亚培训研讨会日益增长的需求的挑战

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The widespread adoption of high-throughput next-generation sequencing (NGS) technology among the Australian life science research community is highlighting an urgent need to up-skill biologists in tools required for handling and analysing their NGS data. There is currently a shortage of cutting-edge bioinformatics training courses in Australia as a consequence of a scarcity of skilled trainers with time and funding to develop and deliver training courses. To address this, a consortium of Australian research organizations, including Bioplatforms Australia, the Commonwealth Scientific and Industrial Research Organisation and the Australian Bioinformatics Network, have been collaborating with EMBL-EBI training team. A group of Australian bioinformaticians attended the train-the-trainer workshop to improve training skills in developing and delivering bioinformatics workshop curriculum. A 2-day NGSworkshop was jointly developed to provide hands-on knowledge and understanding of typical NGS data analysis workflows. The road show^ style workshop was successfully delivered at five geographically distant venues in Australia using the newly established Australian NeCTAR Research Cloud.We highlight the challenges we had to overcome at different stages from design to delivery, including the establishment of an Australian bioinformatics training network and the computing infrastructure and resource development. A virtual machine image, workshop materials and scripts for configuring a machine with workshop contents have all been made available under a Creative Commons Attribution 3.0 Unported License. This means participants continue to have convenient access to an environment they had become familiar and bioinformatics trainers are able to access and reuse these resources.
机译：在澳大利亚生命科学研究界中，高通量下一代测序（NGS）技术的广泛采用突显了迫切需要提高生物学家对处理和分析其NGS数据所需工具的技能。由于缺乏熟练的培训师，他们缺乏时间和资金来开发和提供培训课程，因此目前澳大利亚缺乏最前沿的生物信息学培训课程。为了解决这个问题，包括澳大利亚生物平台，澳大利亚联邦科学与工业研究组织和澳大利亚生物信息网络在内的澳大利亚研究组织财团已与EMBL-EBI培训团队进行了合作。一群澳大利亚生物信息学家参加了培训师讲习班，以提高开发和提供生物信息学讲习班课程的培训技能。联合开发了一个为期2天的NGSworkshop，以提供动手知识和对典型NGS数据分析工作流的理解。使用新建立的澳大利亚NeCTAR研究云，在澳大利亚五个地理上相距遥远的地点成功举办了路演^风格的讲习班，我们强调了从设计到交付各个阶段必须克服的挑战，包括建立澳大利亚生物信息学培训网络以及计算基础架构和资源开发。根据Creative Commons Attribution 3.0 Unported许可证，虚拟机映像，车间资料和用于配置带有车间内容的机器的脚本均已可用。这意味着参与者可以继续方便地进入他们已经熟悉的环境，而生物信息学培训师可以访问和重用这些资源。

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