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Rejoining of double-stranded DNA-fragments studied in different size-intervals.

机译:在不同的大小间隔研究双链DNA片段的重新加入。

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PURPOSE: To measure rejoining of radiation-induced doublestranded DNA-fragments of different sizes and to evaluate the effects of size-resolution in the analysis of rejoining. MATERIAL AND METHODS: Normal human fibroblasts (GM5758) were irradiated with photons or accelerated nitrogen ions (linear energy transfer, LET = 125 keV microm(-1)) and incubated for repair for 0-22 h. Double-stranded DNA-fragments from the irradiated cells were separated by pulsed-field gel electrophoresis in the range approximately 5 kbp to 5.7 Mbp. RESULTS: For cells irradiated with high LET nitrogen ions, there was an increase in the fast half-time from approximately 5 min for fragments < 400 kbp to 10 min when all fragments < 5.7 Mbp were measured. Further, the fraction of fragments rejoined by the slow-rejoining phase increased significantly for increased threshold sizes. The fraction of unrejoined fragments after 22 h and the half-time for the slow-rejoining phase remained constant for all threshold sizes. For cells irradiated with lower doses of low LET radiation the rejoining was shifted towards a slower kinetics when fragments up to 10 Mbp were excluded in the analysis. CONCLUSION: DNA exclusion-size and resolution may affect the estimates of DNA double-strand break rejoining. Using a low-resolution technique that does not detect small fragments will result in an underestimation, or even disappearance of the fast-rejoining phase. This is due to substantial rejoining of fragments taking place before the fragments are of sufficient size to be monitored.
机译:目的:测量不同尺寸的辐射诱导的双链DNA片段的重新结合,并评估尺寸分辨率在重新结合分析中的作用。材料与方法:用光子或加速的氮离子(线性能量转移,LET = 125 keV microm(-1))照射正常人成纤维细胞(GM5758),并保温0-22小时。来自被照射细胞的双链DNA片段通过脉冲场凝胶电泳在大约5kbp至5.7Mbp的范围内分离。结果:对于用高LET氮离子辐照的细胞,快速半衰期从小于400 kbp的片段的大约5分钟增加到测量所有小于5.7 Mbp的片段的10分钟。此外,随着阈值大小的增加,由慢速重新结合阶段重新结合的片段比例也显着增加。对于所有阈值大小,慢速重新结合阶段的22小时和半时间后未重新结合的碎片比例均保持不变。对于用较低剂量的低LET辐射辐照的细胞,当分析中排除高达10 Mbp的片段时,重新结合朝着较慢的动力学转变。结论:DNA排阻的大小和分辨率可能影响DNA双链断裂重新结合的估计。使用无法检测小碎片的低分辨率技术会导致低估,甚至导致快速重新加入阶段的消失。这是由于在碎片具有足够的大小以进行监视之前,发生了碎片的大量重新结合。

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