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Scanning electrochemical microscopy (SECM) based detection of oligonucleotide hybridization and simultaneous determination of the surface concentration of immobilized oligonucleotides on gold

机译:基于扫描电化学显微镜(SECM)的寡核苷酸杂交检测以及同时测定金上固定寡核苷酸的表面浓度

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The direct mode of scanning electrochemical microscopy (SECM) was used for the local deposition of oligonucleotide (ODN) patterns on thin gold films and the generation-collection (GC) mode was applied for the determining the amount of surface-accessible oligonucleotides. The local deposition was achieved through the micrometer-sized formation of a conducting polymer bearing 15(mcr) single-stranded oligonucleotide strands. After the interaction of the oligonucleotide with its biotin-labeled complimentary strand, streptavidin was bound. The molecular assembly was completed by linking biotin-labeled P-galactosidase from Escherichia coli to the streptavidin. The activity of the linked beta-galactosidase was mapped with SECM in the GC mode by monitoring the oxidation of p-aminophenol (PAP) formed in the enzyme-catalyzed hydrolysis of p-aminophenyl-beta-D-galactopyranoside. The feedback effect due to recycling of the reaction product at the gold surface was analyzed. It was shown experimentally that this effect becomes insignificant at ultramicroelectrode (UME)-substrate distances larger than 3 UME radii. The flux of formed PAP allowed the determination the surface density of accessible oligonucleotide strands in the functionalized polymer. It was shown that that thicker pyrrole/ODN-Pyrrole polymer films do not lead to a significantly increased accessible ODN surface concentration.
机译:扫描电化学显微镜(SECM)的直接模式用于在金薄膜上局部沉积寡核苷酸(ODN)模式,而世代收集(GC)模式用于确定表面可及的寡核苷酸的数量。通过微米尺寸的带有15(mcr)单链寡核苷酸链的导电聚合物的形成来实现局部沉积。寡核苷酸与其生物素标记的互补链相互作用后,链霉亲和素被结合。通过将大肠杆菌的生物素标记的P-半乳糖苷酶与链霉亲和素连接起来,完成了分子组装。通过监测在对氨基苯酚-β-D-吡喃半乳糖苷的酶催化水解过程中形成的对氨基苯酚(PAP)的氧化,在GC模式下用SECM绘制了连接的β-半乳糖苷酶的活性图。分析了由于反应产物在金表面的再循环而产生的反馈效应。实验表明,在大于3 UME半径的超微电极(UME)-基底距离处,这种作用变得微不足道。形成的PAP的通量允许确定官能化聚合物中可及的寡核苷酸链的表面密度。结果表明,较厚的吡咯/ ODN-吡咯聚合物薄膜不会导致可及的ODN表面浓度显着增加。

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