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Integrity of human YACs during propagation in recombination-deficient yeast strains.

机译:人YAC在重组缺陷型酵母菌株中繁殖期间的完整性。

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摘要

Several isogenic strains with defects in recombination/repair genes (RAD1, RAD50, RAD51, RAD52, RAD54, and RAD55) were examined for their ability to propagate accurately a variety of linear and circular yeast artificial chromosomes (YACs) containing human DNA inserts. To assess YAC stability, the human DNA inserts were internally marked by an ADE2-pBR-URA3 cassette. Following selection for Ura- clones on 5-fluoroorotic acid containing medium, the following types of YAC deletions were identified: (i) those caused by homologous recombination with a telomeric pBR sequence; (ii) internal deletions, presumed to occur by recombination between commonly occurring DNA repeats such as Alu and LINE sequences; and (iii) deletions leading to loss of part of a YAC arm. rad52 host strains, but not other recombination-deficient strains, decreased the rate of all types of YAC deletions 25- to 400-fold. We have also developed and tested kar1 strains with a conditional RAD52 gene that allow transfer of a YAC from any host into a recombination-deficient background. These strains provide an efficient tool for stabilization of YACs and are useful for allowing additional recombinational modification of YACs. Copyright 1999 Academic Press.
机译:检查了几个在重组/修复基因中存在缺陷的同基因菌株(RAD1,RAD50,RAD51,RAD52,RAD54和RAD55)的能力,使其能够准确繁殖各种包含人类DNA插入片段的线性和环状酵母人工染色体(YAC)。为了评估YAC的稳定性,人类DNA插入片段内部用ADE2-pBR-URA3盒进行了标记。在含有5-氟乳清酸的培养基上选择Ura-克隆后,鉴定出以下类型的YAC缺失:(i)与端粒pBR序列同源重组引起的YAC缺失; (ii)内部缺失,推测是由于常见的DNA重复序列如Alu和LINE序列之间的重组而发生的; (iii)导致YAC臂部分丢失的删除。 rad52宿主菌株,而不是其他缺乏重组的菌株,将所有类型的YAC缺失率降低了25到400倍。我们还开发并测试了带有条件RAD52基因的kar1菌株,该基因可将YAC从任何宿主转移到重组缺陷的背景中。这些菌株为稳定YAC提供了有效的工具,可用于允许YAC进行其他重组修饰。版权所有1999 Academic Press。

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