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Folding lattice HP model of proteins using the bond-fluctuation model

机译:使用键波动模型的蛋白质折叠晶格HP模型

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In this paper, we find 'good' amino acid sequences that fold to a desired "target" structure as a ground state conformation of lowest accessible Free energy using the modified bond-fluctuation lattice model. In our protein lattice model, bond lengths are set to vary between one and root2 in three dimensions. Our results agree well with the native state energies E-N Comparisons with the "putative native state" (PNS) energy E-PNS and the "hydrophobic zippers" (HZ) energy E-HZ are made. For every sequence, the global energy minimum is found to have multiple degeneracy of conformations, which is the same result as for the constraint-based hydrophobic core construction (CHCC) method. The interior conformations of the ground states are also discussed. [References: 25]
机译:在本文中,我们使用改进的键涨落晶格模型找到了折叠成所需“目标”结构的“良好”氨基酸序列,将其作为最低可利用自由能的基态构象。在我们的蛋白质晶格模型中,键长设置为在三个维度上在1和root2之间变化。我们的结果与原始态能量E-N非常吻合。与“假定的原始态”(PNS)能量E-PNS和“疏水拉链”(HZ)能量E-HZ进行了比较。对于每个序列,发现整体能量最小值具有多个构象简并性,这与基于约束的疏水核构造(CHCC)方法的结果相同。还讨论了基态的内部构象。 [参考:25]

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