PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

Perez-Riverol Yasset; Xu Qing-Wei; Wang Rui; Uszkoreit Julian; Griss Johannes; Sanchez Aniel; Reisinger Florian; Csordas Attila; Ternent Tobias; del-Toro Noemi; Dianes Jose A.; Eisenacher Martin; Hermjakob Henning; Vizcaino Juan Antonio

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PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

机译：PRIDE Inspector Toolsuite：迈向蛋白质组学数据标准格式和ProteomeXchange数据集质量评估的通用可视化工具

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The original PRIDE Inspector tool was developed as an open source standalone tool to enable the visualization and validation of mass-spectrometry (MS)-based proteomics data before data submission or already publicly available in the Proteomics Identifications (PRIDE) database. The initial implementation of the tool focused on visualizing PRIDE data by supporting the PRIDE XML format and a direct access to private (password protected) and public experiments in PRIDE.

机译：原始的PRIDE Inspector工具是作为开放源代码的独立工具开发的，能够在数据提交之前或在蛋白质组学标识（PRIDE）数据库中公开提供数据之前，对基于质谱（MS）的蛋白质组学数据进行可视化和验证。该工具的最初实现侧重于通过支持PRIDE XML格式并直接访问PRIDE中的私有（受密码保护）和公共实验来可视化PRIDE数据。

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《Molecular & cellular proteomics: MCP》 |2016年第1期|共13页
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Perez-Riverol Yasset; Xu Qing-Wei; Wang Rui; Uszkoreit Julian; Griss Johannes; Sanchez Aniel; Reisinger Florian; Csordas Attila; Ternent Tobias; del-Toro Noemi; Dianes Jose A.; Eisenacher Martin; Hermjakob Henning; Vizcaino Juan Antonio;
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正文语种 eng
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1. PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets [J] . Perez-Riverol Yasset, Xu Qing-Wei, Wang Rui, Molecular & cellular proteomics: MCP . 2016,第1期

机译：PRIDE Inspector Toolsuite：迈向蛋白质组学数据标准格式和ProteomeXchange数据集质量评估的通用可视化工具
2. Using the PRIDE Database and ProteomeXchange for Submitting and Accessing Public Proteomics Datasets [J] . Andrew F. Jarnuczak, Juan Antonio Vizcaino Current Protocols in Bioinformatics . 2017,第Suppla59期

机译：使用Pride数据库和Proteomexchange来提交和访问公共蛋白质组学数据集
3. The PRoteomics IDEntification (PRIDE) converter 2 framework: An improved suite of tools to facilitate data submission to the PRIDE database and the proteomexchange consortium [J] . C?téR.G., GrissJ., DianesJ.A., Molecular & cellular proteomics: MCP . 2012,第12期

机译：PRoteomics IDEntification（PRIDE）转换器2框架：改进的工具套件，可方便将数据提交到PRIDE数据库和proteomexchange联盟
4. Visualizing Quantitative Proteomics Datasets using Treemaps [C] . Halligan, Brian D., Mirza, . 2007

机译：使用树形图可视化定量蛋白质组学数据集
5. Supervised precision ordinal clustering – A human-machine learning algorithm to create accurate clusters in big datasets: Application to indiana water quality data with novel visualization techniques [D] . Singh, Sarabjit 2014

机译：有监督的有序序数聚类–一种人机学习算法，可在大型数据集中创建准确的聚类：采用新颖的可视化技术应用于印第安纳州水质数据
6. PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets [O] . Yasset Perez-Riverol, Qing-Wei Xu, Rui Wang, 2016

机译：PRIDE Inspector Toolsuite：向蛋白质组学数据标准格式和ProteomeXchange数据集质量评估的通用可视化工具迈进
7. The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium [O] . Côté, Richard G., Griss, Johannes, Dianes, José A., 2012

机译：pRoteomics IDEntification（pRIDE）转换器2框架：一套改进的工具，便于向pRIDE数据库和proteomeXchange联盟提交数据

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets

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