CID: a rapid and efficient bioinformatic tool for the detection of SSRs from genomic libraries

Freitas PD; Martins DS; Galetti PM

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CID: a rapid and efficient bioinformatic tool for the detection of SSRs from genomic libraries

机译：CID：一种快速有效的生物信息学工具，用于从基因组文库中检测SSR

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CID is a computational tool developed in the Web environment to process cloned DNA fragments with the objective of masking the vector and adaptor regions, detecting the presence of microsatellites and designing the most appropriate primer pairs for the amplification of the identified repetitive sequences. This entire process is executed by the user in a simple and automated manner with the data input as a Zip file of chromatograms or a multiFASTA file. Thus, it is possible to analyse dozens of sequences at the same time, optimizing data processing and the search for the information of interest. CID is freely available on http://www.shrimp.ufscar.br/cid/index.php.

机译：CID是在Web环境中开发的一种计算工具，用于处理克隆的DNA片段，目的是屏蔽载体和衔接子区域，检测微卫星的存在并设计最合适的引物对，以扩增已鉴定的重复序列。用户以简单和自动化的方式执行整个过程，输入的数据为色谱图的Zip文件或multiFASTA文件。因此，可以同时分析数十个序列，优化数据处理并搜索感兴趣的信息。 CID可从http://www.shrimp.ufscar.br/cid/index.php免费获得。

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《Molecular ecology notes》 |2008年第1期|共2页
作者
Freitas PD; Martins DS; Galetti PM;
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原文格式 PDF
正文语种 eng
中图分类 *;
关键词
flanking primers; microsatellites; Web-based tool;

机译：侧翼引物;微卫星;基于Web的工具;

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1. CID: a rapid and efficient bioinformatic tool for the detection of SSRs from genomic libraries [J] . Freitas PD, Martins DS, Galetti PM Molecular ecology notes . 2008,第1期

机译：CID：一种快速有效的生物信息学工具，用于从基因组文库中检测SSR
2. Classroom as Genome: Using the Tools of Genomics and Bioinformatics to Illuminate Classroom Observation Data [J] . Robert M. Erdmann, Marilyne Stains CBE Life Sciences Education . 2019,第1期

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3. Next-generation teaching: a template for bringing genomic and bioinformatic tools into the classroom [J] . Hotaling Scott, Slabach Brittany L., Weisrock David W. Journal of biological education . 2018,第3期

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CID: a rapid and efficient bioinformatic tool for the detection of SSRs from genomic libraries

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