Computational methods for transcription factor binding site analysis

• 1. 一种矿物自动分析系统中自动获取X射线分析位置的计算方法 [P] . 中国专利： CN111398323A . 2020-07-10
• 2. 版图分析管控标准的计算方法及版图分析的管控方法 [P] . 中国专利： CN111783381A . 2020-10-16
• 3. Synthetic promoters for CHO cells, methods of producing synthetic promoters using transcription factor binding site modules [P] . AU2014356396A1 . 2016-06-02

  机译： CHO细胞的合成启动子，使用转录因子结合位点模块产生合成启动子的方法

• 4. SYNTHETIC PROMOTERS FOR CHO CELLS, METHODS OF PRODUCING SYNTHETIC PROMOTERS USING TRANSCRIPTION FACTOR BINDING SITE MODULES [P] . 韩国专利： KR20160087903A . 2016-07-22

  机译： CHO细胞的合成启动子，使用转录因子结合位点模块生产合成启动子的方法

• 5. Synthetic promoters for cho cells, methods of producing synthetic promoters using transcription factor binding site modules [P] . IL245565D0 . 2016-06-30

  机译： 用于cho细胞的合成启动子，使用转录因子结合位点模块产生合成启动子的方法

• 1. Comparative Analysis of Regulatory Motif Discovery Tools for Transcription Factor Binding Sites [J] . 基因组蛋白质组与生物信息学报（英文版） . 2007,第002期
• 2. Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation [J] . Zhiming Dai, Xianhua Dai, Qian Xiang, 基因组蛋白质组与生物信息学报（英文版） . 2009,第004期
• 3. Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation [J] . Zhiming Dai, Xianhua Dai, Qian Xiang, 基因组蛋白质组与生物信息学报：英文版 . 2009,第004期
• 4. Characterization of Binding Sites of Eukaryotic Transcription Factors [J] . Jiang Qian, Jimmy Lin, Donald J. Zack 基因组蛋白质组与生物信息学报（英文版） . 2006,第002期
• 5. Development of Computational Methods to Search for FoxA Transcription Factor Binding Sites, Their Experimental Verification and Application to the Analysis of Chip-Seq Data [J] . V. G. Levitsky, D. Yu. Oshchepkov, N. I. Ershov, Doklady biochemistry & biophysics . 2011,第JANaaFEBa期
• 6. Computational Identification of Transcription Factor Binding Sites via a Transcription-factor-centric Clustering (TFCC) Algorithm. [J] . Zhu Z, Pilpel Y, Church GM Journal of Molecular Biology . 2002,第1期
• 7. A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor‐binding sites [J] . Shirin Moradifard, Reza Saghiri, Parastoo Ehsani, Molecular Genetics & Genomic Medicine . 2020,第5期
• 8. COMPUTATIONAL ANALYSIS AND MODELING OF GENOME-SCALE AVIDITY DISTRIBUTION OF TRANSCRIPTION FACTOR BINDING SITES IN CHIP-PET EXPERIMENTS [C] . VLADIMIR A. KUZNETSOV, YURIY L. ORLOV, CHIA LIN WEI, International Conference on Genome Informatics . 2007
• 9. Computational methods for predicting transcription factor binding sites. [D] . Osada, Robert Radoslaw Zygmunt. 2006
• 10. A preliminary computational outputs versus experimental results: Application of sTRAP a biophysical tool for the analysis of SNPs of transcription factor‐binding sites [O] . Shirin Moradifard, Reza Saghiri, Parastoo Ehsani, 2020
• 11. Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm [O] . Zhou Zhu, Yitzhak Pilpel, George M. Church 2002

• 1. A distribution pattern assisted method of transcription factor binding site discovery for both yeast and filamentous fungi [J] . Jinnan Hu ,Chenxi Chen ,Kun Huang . 生命科学与技术进展（英文） . 2013,第4期
• 2. Qnet-BSTM:一个转录因子结合位点文本挖掘算法 [C] . . 第二十五届中国数据库学术会议(NDBC2008) . 2008
• 3. DAP--seq技术挖掘大豆GmRAV转录因子结合位点分析 [A] . 陶亚涵 . 2021