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An Improved 3D Genome Structure Model

机译:改进的3D基因组结构模型

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摘要

To study the genome structure in three-dimensional (3D) space and its relation to biological functions, a variety of experimental approaches, such as biochemical methods, electron microscopy, fluorescent in sjtu hybridization (FISH) and chromosome conformation capture (3C)-based methods, are utilized together to probe the hierarchical order of 3D genome organization with resolution ranging from DNA atomic segment to nuclei chromosome. The advances of experiments are providing us with more data on how global chromosomal architecture is organized in 3D space, and opening the opportunities to predict 3D genome structure by computational methods of data integration. However, integrating data from these disparate experiments is a challenge due to the significant differences and even discrepancies among them, e.g. available data number, resolution scale, credibility and noise.
机译:要研究三维(3D)空间中的基因组结构及其与生物学功能的关系,可以使用多种实验方法,例如生化方法,电子显微镜,荧光荧光杂交(FISH)和基于染色体构象捕获(3C)这些方法一起用于探测3D基因组组织的层次顺序,其分辨率范围从DNA原子片段到核染色体。实验的进展为我们提供了有关如何在3D空间中组织全局染色体体系结构的更多数据,并为通过数据集成的计算方法预测3D基因组结构提供了机会。然而,由于它们之间的显着差异甚至差异,例如,将来自这些不同实验的数据进行整合是一个挑战。可用数据编号,分辨率范围,可信度和噪音。

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