EM-Coffee: An Improvement of M-Coffee

机译：EM-Coffee：M-Coffee的改进

获取原文

页面导航

摘要
著录项
相似文献
相关主题

摘要

Multiple sequence alignment is a basic of sequence analysis. In the development of multiple sequence alignment (MSA) approaches, M-Coffee [1] was proposed as a meta-method for assembling outputs from different individual multiple aligners into one single MSA to boost the accuracy. Authors showed that M-Coffee outperformed individual alignment methods. In this paper, we propose an improvement of M-coffee, called EM-Coffee, by introducing a new weighting scheme for combining input alignments. Experiments with benchmark datasets showed that EM-Coffee produced better results than M-Coffee, T-Coffee, Muscle and some other widely used methods. Thus, we provide an alternative option for researchers to align sequences.

机译：多序列比对是序列分析的基础。在多序列比对（MSA）方法的发展中，M-Coffee [1]被提出作为一种元方法，用于将来自不同的多个比对器的输出组装成一个单一的MSA，以提高准确性。作者表明，M-Coffee优于单独的对齐方法。在本文中，我们通过引入用于合并输入对齐方式的新加权方案，提出了一种改进的M-咖啡（称为EM-Coffee）。使用基准数据集进行的实验表明，EM-Coffee产生的结果优于M-Coffee，T-Coffee，Muscle和其他一些广泛使用的方法。因此，我们为研究人员提供了比对序列的替代选择。

著录项

来源
《Second International Conference on Knowledge and Systems Engineering》|2010年|p.14-19|共6页
会议地点
作者
Tuan Nguyen Ha Anh; Cuong Ha Tuan; Dung Nguyen Hoang; Vinh Le Sy; Phuong Tu Minh;
展开▼
作者单位

展开▼
会议组织
原文格式 PDF
正文语种
中图分类系统工程;
关键词
DNA; M-Coffee; Multiple sequence alignment; Muscle; TCoffee; protein;

机译：DNA; M-Coffee;多序列比对;肌肉; TCoffee;蛋白质;

相似文献

外文文献
中文文献
专利

1. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods [J] . Cedric Notredame, Cornelius V. Jongeneel, Desmond G. Higgins, Nucleic acids research . 2007,第suppla2期

机译：M-Coffee Web服务器：一种通过结合其他比对方法来计算多个序列比对的元方法
2. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods [J] . Cedric Notredame, Cornelius V. Jongeneel, Desmond G. Higgins, Nucleic acids research . 2007,第suppla2期

机译：M-Coffee Web服务器：一种通过结合其他比对方法来计算多个序列比对的元方法
3. M-Coffee: combining multiple sequence alignment methods with T-Coffee [J] . Sain M. Wallace, Orla OSullivan, Desmond G. Higgins, Nucleic Acids Research . 2006,第6期

机译：M-Coffee：结合多种序列比对方法与T-Coffee
4. EM-Coffee: An Improvement of M-Coffee [C] . Tuan Nguyen Ha Anh, Cuong Ha Tuan, Dung Nguyen Hoang, Second International Conference on Knowledge and Systems Engineering . 2010

机译：EM-Coffee：M-Coffee的改进
5. A systematic approach for on-site productivity improvement with proposed construction productivity improvement officer (CPIO) role and Task Based Productivity Loss Control and Improvement (TBPLCI) framework. [D] . Ranasinghe, Upul. 2012

机译：一种系统的现场生产力改善方法，该方法具有拟议的建筑生产力改善官员（CPIO）角色和基于任务的生产力损失控制与改善（TBPLCI）框架。
6. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods [O] . Sebastien Moretti, Fabrice Armougom, Iain M. Wallace, 2007

机译：M-Coffee Web服务器：一种通过结合其他比对方法来计算多个序列比对的元方法
7. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. [O] . Moretti, S., Armougom, F., Wallace, I.M., 2007

机译：M-Coffee Web服务器：一种元方法，通过组合其他比对方法来计算多个序列比对。

EM-Coffee: An Improvement of M-Coffee

摘要

著录项

相似文献

相关主题

期刊订阅