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Deep Multi-task Prediction of Lung Cancer and Cancer-free Progression from Censored Heterogenous Clinical Imaging

机译:从审查的异质性临床成像对肺癌和无癌进展的深度多任务预测

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Annual low dose computed tomography (CT) lung screening is currently advised for individuals at high risk of lung cancer (e.g., heavy smokers between 55 and 80 years old). The recommended screening practice significantly reduces all-cause mortality, but the vast majority of screening results are negative for cancer. If patients at very low risk could be identified based on individualized, image-based biomarkers, the health care resources could be more efficiently allocated to higher risk patients and reduce overall exposure to ionizing radiation. In this work, we propose a multi-task (diagnosis and prognosis) deep convolutional neural network to improve the diagnostic accuracy over a baseline model while simultaneously estimating a personalized cancer-free progression time (CFPT). A novel Censored Regression Loss (CRL) is proposed to perform weakly supervised regression so that even single negative screening scans can provide small incremental value. Herein, we study 2287 scans from 1433 de-identified patients from the Vanderbilt Lung Screening Program (VLSP) and the Consortium for Molecular and Cellular Characterization of Screen-Detected Lesions (MCL) cohorts. Using five-fold cross-validation, we train a 3D attention-based network under two scenarios: (1) single-task learning with only classification, and (2) multi-task learning with both classification and regression. The single-task learning leads to a higher AUC compared with the Kaggle challenge winner pre-trained model (0.878 v. 0.856), and multitask learning significantly improves the single-task one (AUC 0.895, p<0.01, McNemar test). In summary, the image-based predicted CFPT can be used in follow-up year lung cancer prediction and data assessment.
机译:目前建议对患有肺癌高风险的个体(例如,年龄在55至80岁之间的重度吸烟者)进行年度低剂量计算机断层扫描(CT)肺部筛查。推荐的筛查方法可显着降低全因死亡率,但绝大多数筛查结果均对癌症不利。如果可以基于个性化的,基于图像的生物标记物识别风险非常低的患者,则可以将医疗资源更有效地分配给较高风险的患者,并减少电离辐射的总体暴露。在这项工作中,我们提出了一个多任务(诊断和预后)深度卷积神经网络,以提高基线模型的诊断准确性,同时估计个性化无癌进展时间(CFPT)。提出了一种新颖的删失回归损失(CRL)来执行弱监督回归,以便即使是单个负筛选扫描也可以提供较小的增量值。本文中,我们研究了来自范德比尔特肺筛查计划(VLSP)和筛查病变的分子和细胞表征联合会(MCL)队列的1433例身份不明患者的2287幅扫描图像。使用五重交叉验证,我们在两种情况下训练了基于3D注意的网络:(1)仅分类的单任务学习,以及(2)分类和回归的多任务学习。与Kaggle挑战赛获胜者预先训练的模型(0.878对0.856)相比,单任务学习导致较高的AUC(AUC),多任务学习显着改善了单任务学习(AUC 0.895,p <0.01,McNemar检验)。综上所述,基于图像的预测CFPT可用于后续年度肺癌预测和数据评估。

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