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Automated and Adaptable Quantification of Cellular Alignment from Microscopic Images for Tissue Engineering Applications

机译:用于组织工程应用的微观图像中细胞排列的自动化和自适应量化

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摘要

Cellular alignment plays a critical role in functional, physical, and biological characteristics of many tissue types, such as muscle, tendon, nerve, and cornea. Current efforts toward regeneration of these tissues include replicating the cellular microenvironment by developing biomaterials that facilitate cellular alignment. To assess the functional effectiveness of the engineered microenvironments, one essential criterion is quantification of cellular alignment. Therefore, there is a need for rapid, accurate, and adaptable methodologies to quantify cellular alignment for tissue engineering applications. To address this need, we developed an automated method, binarization-based extraction of alignment score (BEAS), to determine cell orientation distribution in a wide variety of microscopic images. This method combines a sequenced application of median and band-pass filters, locally adaptive thresholding approaches and image processing techniques. Cellular alignment score is obtained by applying a robust scoring algorithm to the orientation distribution. We validated the BEAS method by comparing the results with the existing approaches reported in literature (i.e., manual, radial fast Fourier transform-radial sum, and gradient based approaches). Validation results indicated that the BEAS method resulted in statistically comparable alignment scores with the manual method (coefficient of determination R2=0.92). Therefore, the BEAS method introduced in this study could enable accurate, convenient, and adaptable evaluation of engineered tissue constructs and biomaterials in terms of cellular alignment and organization.
机译:细胞排列在许多组织类型(例如肌肉,腱,神经和角膜)的功能,物理和生物学特性中起着至关重要的作用。当前对这些组织再生的努力包括通过开发促进细胞排列的生物材料来复制细胞微环境。为了评估工程微环境的功能有效性,一项重要标准是细胞比对的量化。因此,需要快速,准确和适应性强的方法来定量用于组织工程应用的细胞排列。为了满足这一需求,我们开发了一种自动方法,即基于二值化的比对得分(BEAS)提取,以确定各种显微图像中的细胞方向分布。该方法结合了中值和带通滤波器的顺序应用,局部自适应阈值处理方法和图像处理技术。通过将稳健的评分算法应用于方向分布,可获得细胞比对得分。我们通过将结果与文献中报道的现有方法(即手动,径向快速傅立叶变换-径向求和和基于梯度的方法)进行比较来验证BEAS方法。验证结果表明,BEAS方法与手工方法在比对得分上具有统计学可比性(测定系数R 2 = 0.92)。因此,这项研究中引入的BEAS方法可以在细胞排列和组织方面实现对工程组织构建体和生物材料的准确,便捷和适应性评估。

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