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SNOMED CT standard ontology based on the ontology for general medical science

机译：基于普通医学科学本体的SNOMED CT标准本体

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Systematized Nomenclature of Medicine—Clinical Terms (SNOMED CT, hereafter abbreviated SCT) is a comprehensive medical terminology used for standardizing the storage, retrieval, and exchange of electronic health data. Some efforts have been made to capture the contents of SCT as Web Ontology Language (OWL), but these efforts have been hampered by the size and complexity of SCT. Our proposal here is to develop an upper-level ontology and to use it as the basis for defining the terms in SCT in a way that will support quality assurance of SCT, for example, by allowing consistency checks of definitions and the identification and elimination of redundancies in the SCT vocabulary. Our proposed upper-level SCT ontology (SCTO) is based on the Ontology for General Medical Science (OGMS). The SCTO is implemented in OWL 2, to support automatic inference and consistency checking. The approach will allow integration of SCT data with data annotated using Open Biomedical Ontologies (OBO) Foundry ontologies, since the use of OGMS will ensure consistency with the Basic Formal Ontology, which is the top-level ontology of the OBO Foundry. Currently, the SCTO contains 304 classes, 28 properties, 2400 axioms, and 1555 annotations. It is publicly available through the bioportal at http://bioportal.bioontology.org/ontologies/SCTO/ . The resulting ontology can enhance the semantics of clinical decision support systems and semantic interoperability among distributed electronic health records. In addition, the populated ontology can be used for the automation of mobile health applications.
机译：系统化的医学术语—临床术语（SNOMED CT，以下简称SCT）是用于标准化电子健康数据的存储，检索和交换的综合医学术语。已经进行了一些努力来将SCT的内容捕获为Web本体语言（OWL），但是这些努力因SCT的大小和复杂性而受到阻碍。我们在这里的建议是开发一个上层本体，并将其用作在SCT中定义术语的基础，以支持SCT的质量保证的方式，例如，允许对定义进行一致性检查以及识别和消除SCT。 SCT词汇表中的冗余。我们提议的高级SCT本体（SCTO）基于普通医学科学本体（OGMS）。 SCTO在OWL 2中实现，以支持自动推断和一致性检查。该方法将允许将SCT数据与使用开放式生物医学本体（OBO）Foundry本体标注的数据集成在一起，因为使用OGMS将确保与OBO Foundry的顶级本体“基本形式本体”的一致性。当前，SCTO包含304个类，28个属性，2400个公理和1555个注释。可通过http://bioportal.bioontology.org/ontologies/SCTO/上的生物门户网站公开获取。由此产生的本体可以增强临床决策支持系统的语义以及分布式电子健康记录之间的语义互操作性。另外，填充的本体可以用于移动健康应用的自动化。

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