SNP discovery and functional annotation in the Panax japonicus var. major transcriptome

Jian Li; Ding-Ping Bai; Xi-Feng Zhang

首页> 外文期刊>RSC Advances >SNP discovery and functional annotation in the Panax japonicus var. major transcriptome

【24h】

SNP discovery and functional annotation in the Panax japonicus var. major transcriptome

机译：人参中的SNP发现和功能注释。主要转录组

获取原文

掌桥外文数据库（机构版） >>

开具论文收录证明 >>

文献代查 >>

页面导航

摘要
著录项
相似文献
相关主题

摘要

Due to the lack of a Panax japonicus var. major reference genome, we assembled a reference transcriptome from P. japonicus C. A. Mey transcriptome sequencing data, and 203?283 unigenes were obtained. In this study, with the assistance from the Trinity, Bowtie2 and SAMtools softwares, 218?465 single nucleotide polymorphisms (SNPs) were identified by mapping the Illumina sequences to the reference transcriptome. The SNP forms included 126?262 transformations and 92?203 transversions. A large number of SNP loci were associated with triterpenoid saponin synthesis: 54 SNPs were associated with cytochrome P450, one with glycosyl transferase and 94 with the biosynthesis of the triterpenoid saponin backbone.

机译：由于缺少人参变种。在主要参考基因组中，我们从日本对虾C. A. Mey转录组测序数据中组装了一个参考转录组，并获得203？283个单基因。在这项研究中，借助于Trinity，Bowtie2和SAMtools软件，通过将Illumina序列映射到参考转录组确定了218-465个单核苷酸多态性（SNP）。 SNP形式包括126→262转化和92→203转化。大量的SNP位点与三萜皂苷的合成有关：54个SNP与细胞色素P450相关，一个与糖基转移酶相关，94个与三萜皂苷骨架的生物合成相关。

著录项

来源
《RSC Advances》 |2019年第37期|共5页
作者
Jian Li; Ding-Ping Bai; Xi-Feng Zhang;
展开▼
作者单位

展开▼
收录信息
原文格式 PDF
正文语种
中图分类化学;
关键词

相似文献

外文文献
中文文献
专利

1. SNP discovery and functional annotation in the Panax japonicus var. major transcriptome [J] . Li Jian, Bai Ding-Ping, Zhang Xi-Feng RSC Advances . 2019,第37期

机译：SNP在Panax japonicus var中的发现和功能注释。重大转录组
2. SNP discovery and functional annotation in the Panax japonicus var. major transcriptome [J] . Jian Li, Ding-Ping Bai, Xi-Feng Zhang RSC Advances . 2019,第37期

机译：人参中的SNP发现和功能注释。主要转录组
3. Comparative transcriptome analysis of rhizome nodes and internodes in Panax. japonicus var. major reveals candidate genes involved in the biosynthesis of triterpenoid saponins [J] . Genomics . 2020,第2期

机译：韧皮术中根茎节点与尤基的比较转录组分析。 japonicus var。主要揭示参与三萜皂苷生物合成的候选基因
4. The Effect of Panax japonicus C. A. Mey. var.major (Burk.) C. Y. Wu et K. M. Feng on the Oscillation System [C] . Jianlan Suo, Weiwei Zhao, Daihuo Liu, International Conference on Green Building, Materials and Civil Engineering . 2013

机译：Panax Japonicus C. A. Mey的效果。 var.major（伯克。）C. Y.Wu等人在振荡系统上
5. De Novo Transcriptome Assembly, Functional Annotation, and SNP Discovery in North American Flying Squirrels (Genus Glaucomys) [D] . Brown, Michael G. C. 2018

机译：De Novo转录组组装，功能注释和SNP在北美飞鼠中的发现（属青光眼）
6. Complete chloroplast genome of Panax japonicus var. major (Burkill) C. Y. Wu K. M. Feng (Araliaceae) and phylogenetic analysis [O] . Hanya Yang, Dequan Zhang 2020

机译：完整的Panax japonicus val的叶绿体基因组。主要（Burkill）C. Y.Wu＆K.M. Feng（Araliaceae）和系统发育分析
7. De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery [O] . J. Fibla, N. Oromi, M. Pascual-Pons, 2020

机译：棕色鳟鱼（Salmo Trutta m.Cario）脑和肌肉转录组的De Novo组装：转录作曲，组织差异表达谱和SNP发现

SNP discovery and functional annotation in the Panax japonicus var. major transcriptome

摘要

著录项

相似文献

相关主题

期刊订阅