Genome-wide identification and phylogenetic analysis of rice FTIP gene family

Mo Zhu; Bowen Yan; Yanjuan Hu; Zhibo Cui; Xiaoxue Wang

首页> 外文期刊>Genomics >Genome-wide identification and phylogenetic analysis of rice FTIP gene family

【24h】

Genome-wide identification and phylogenetic analysis of rice FTIP gene family

机译：水稻FTIP基因家族的基因组鉴定与系统发育分析

获取原文

掌桥外文数据库（机构版） >>

开具论文收录证明 >>

文献代查 >>

页面导航

摘要
著录项
相似文献
相关主题

摘要

FT-INTERACTING PROTEIN (FTIP) gene family in rice are the members of multiple C2 domain and transmembrane region proteins (MCTPs). There are many homologs of OsFTIPs in plants; however, the bioinformatics of them remains unclear. In the studies, 13 OsFTIP genes are identified in rice. OsFTIPs are unevenly located in 12 chromosomes. The OsFTIPs are phylogenetically divided into three clades. Cis-elements respond to abiotic stress, light, and hormones are found in the promoter region of OsFTIPs which are induced by the stimuli. All OsFTIPs are expressed with different profiles. Syntenic analysis of 128 OsFTIPs and FTIP-like homologs reveals that various number of gene pairs are identified between rice and other species. The 128 FTIP-like homologs are divided into six groups which fall into three classes. Ten motifs are shared by most OsFTIPs and their homologs. The studies provide a theoretical basis for further elucidating the functions of OsFTIP gene family.

机译：在水稻中的FT相互作用蛋白（FTIP）基因家族是多个C2结构域和跨膜区蛋白（MCTP）的成员。植物中有许多OSFIPS的同源物;然而，它们的生物信息学仍然不清楚。在研究中，在水稻中鉴定了13个OSFIP基因。 osfips位于12条染色体中不均匀。 osftips是文学性分为三个片状的。顺式元素响应非生物应激，光和激素在由刺激诱导的osfips的启动子区域中发现。所有osptips都以不同的配置文件表示。 128次奥特克斯和FTIP样同源物的同步分析表明，在水稻和其他物种之间鉴定了各种数量的基因对。 128个纤维状的同源物分为六组，落入三类。十个主题由大多数osfatips及其同源物共享。该研究提供了进一步阐明osfid基因家族的功能的理论依据。

著录项

来源
《Genomics》 |2020年第5期|共12页
作者
Mo Zhu; Bowen Yan; Yanjuan Hu; Zhibo Cui; Xiaoxue Wang;
展开▼
作者单位

展开▼
收录信息
原文格式 PDF
正文语种
中图分类
关键词
OsFTIPOsFTIP-likeMCTPsPhylogenetic analysisRiceFTIPFT-INTERACTING PROTEINMCTPmultiple C2 domain and transmembrane region proteinsPDplasmodesmataKN1KNOTTED 1STMshoot meristemlessFTFLOWERING LOCUS THd3aHeading Date 3aRFT1Rice Flowering Locus T 1SAMshoot apical meristemFTIP1FT-INTERACTING PROTEIN 1NaKR1SODIUM POTASSIUM ROOT DEFECTIVE 1PRT-Cphosphoribosyltransferase C-terminal domainERendoplasmic reticulumQKYQUIRKYHMMHidden Markov ModelIDidentityCDScoding sequenceMWmolecular weightpIisoelectric pointPMplasma membraneCytocytoplasmUTRuntranslated regionAREanaerobic regulatory elementABAabscisic acidABREABA responsive elementMeJAmethyl jasmonateqRT-PCRquantitative RT-PCRDASdays after sowingDATdays after transplantingMEMEmultiple Em for motif elicitation;

机译：OsFTIPOsFTIP-likeMCTPsPhylogenetic analysisRiceFTIPFT相互作用PROTEINMCTPmultiple C2结构域和跨膜区proteinsPDplasmodesmataKN1KNOTTED 1STMshoot meristemlessFTFLOWERING LOCUS THd3aHeading日期3aRFT1Rice FLOWERING LOCUSŤ1SAMshoot心尖meristemFTIP1FT相互作用蛋白1NaKR1SODIUM钾ROOT DEFECTIVE 1PRT-Cphosphoribosyltransferase C末端domainERendoplasmic reticulumQKYQUIRKYHMMHidden马尔可夫ModelIDidentityCDScoding sequenceMWmolecular weightpIisoelectric pointPMplasma membraneCytocytoplasmUTRuntranslated regionAREanaerobic监管elementABAabscisic acidABREABA响应ElementMejamameThyl JasmonateQRT-PCrQuantitative RT-PCRDasdays在TransplantingMemultiple EM以便主题委员会之后;

相似文献

外文文献
中文文献
专利

1. Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice [J] . Meenu Kapoor, Rita Arora, Tenisha Lama, BMC Genomics . 2008,第1期

机译：Dicer样，Argonaute和依赖RNA的RNA聚合酶基因家族的全基因组鉴定，组织和系统发育分析及其在水稻生殖发育和胁迫期间的表达分析
2. Genome-wide identification of the class III aminotransferase gene family in rice and expression analysis under abiotic stressATIII gene family in japonica and indica rice [J] . Jian Sun, Dong-Wei Xie, Hong-Wei Zhao, Genes and genomics . 2013,第5期

机译：水稻Ⅲ类转氨酶基因家族的全基因组鉴定及非生物胁迫下粳稻和in稻ATIII基因家族的表达分析
3. Genome-wide identification, phylogenetic analysis, and expression profiling of the BBX family genes in pear [J] . Zou Zhiyan, Wang Rihong, Wang Ran, The Journal of Horticultural Science & Biotechnology . 2018,第1期

机译：梨中BBX家族基因的基因组型鉴定，系统发育分析和表达谱
4. Genome-wide analysis and identification of abiotic stress responsive transcription factor family genes and miRNAs in bread wheat (Triticumaestivum L.): Genomic study of bread wheat [C] . Sarika Sahu, A. R. Rao, K. C. Bansal, 2016 International Conference on Bioinformatics and Systems Biology . 2016

机译：面包小麦（Triticumaestivum L.）中非生物胁迫响应转录因子家族基因和miRNA的全基因组分析和鉴定：面包小麦的基因组研究
5. Alignment of phylogenetically unambiguous indels for genome-wide phylogenetic analysis and detection of lateral gene transfer. [D] . McCrow, John Pitkin. 2008

机译：系统发育明确的插入/缺失序列的比对，用于全基因组系统发育分析和横向基因转移检测。
6. Genome-wide identification organization and phylogenetic analysis of Dicer-like Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice [O] . Meenu Kapoor, Rita Arora, Tenisha Lama, 2008

机译：Dicer样Argonaute和依赖RNA的RNA聚合酶基因家族的全基因组鉴定组织和系统发育分析及其在水稻生殖发育和胁迫期间的表达分析
7. Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice [O] . Meenu Kapoor, Rita Arora, Tenisha Lama, 2008

机译：Dicer样，Argonaute和依赖RNA的RNA聚合酶基因家族的全基因组鉴定，组织和系统发育分析及其在水稻生殖发育和胁迫期间的表达分析

Genome-wide identification and phylogenetic analysis of rice FTIP gene family

摘要

著录项

相似文献

相关主题

期刊订阅