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首页> 外文期刊>Biophysical Chemistry: An International Journal Devoted to the Physical Chemistry of Biological Phenomena >The influence of the peptide bond on the conformation of amino acids: a theoretical and FT-IR matrix-isolation study of N-acetylproline.
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The influence of the peptide bond on the conformation of amino acids: a theoretical and FT-IR matrix-isolation study of N-acetylproline.

机译:肽键对氨基酸构象的影响:N-乙酰脯氨酸的理论和FT-IR基质隔离研究。

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摘要

A combined experimental matrix-isolation FT-IR and theoretical study has been performed to investigate the conformational behavior of N-acetylproline. The conformational landscape of N-acetylproline was explored using successively higher computational methods, i.e. HF, DFT(B3LYP) and finally MP2. The exploration resulted in 10 conformations with a relative energy difference smaller than 22 kJ.mol(-1) at the HF/3-21G level of theory. These conformations led to six different conformations after DFT(B3LYP) optimizations. Further optimization at the MP2/6-31++G** level of theory resulted in the same six conformations, all of them with an energy difference smaller than 11.5kJ.mol(-1). One conformation with an intramolecular H-bond was found which was energetically the most favorable conformation. The vibrational and thermodynamical features were calculated using the DFT and MP2 methodologies. In the experimental matrix-isolation FT-IR spectrum, the most stable conformation was dominant and at least two non-H-bonded conformations could be identified. An experimental rotamerization constant between the H-bonded and the other non-H-bonded conformations was estimated and appeared to agree reasonably well with the theoretical MP2 predictions. Some new spectral features of N-acetylproline compared to proline were discovered which might be used to discriminate between the acetylated and non-acetylated form.
机译:已经进行了组合的实验基质隔离FT-IR和理论研究以研究N-乙酰脯氨酸的构象行为。使用连续更高的计算方法,即HF,DFT(B3LYP)和最终MP2,探索了N-乙酰脯氨酸的构象景观。勘探导致10个构象,其具有小于22kJ.mol(-1)的相对能量差,在理论的水平上。这些构象导致DFT(B3LYP)优化后六种不同的构象。在MP2 / 6-31 ++ G **理论水平的进一步优化导致相同的六个构象,所有这些都具有小于11.5kJ.mol(-1)的能量差。发现一种与分子内H键的构象,其具有充满活力的符合性。使用DFT和MP2方法计算振动和热力学特征。在实验基质隔离FT-IR光谱中,最稳定的构象是显性的,并且可以鉴定至少两个非H键合构象。估计H键合和其他非H键合构象之间的实验旋转恒定恒定,并且似乎与理论MP2预测相当良好。发现与脯氨酸相比的N-乙酰脯氨酸的一些新的光谱特征,其可用于区分乙酰化和非乙酰化形式。

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